* control if statistics are collected and shown (85) ArneBinder
* make it optional to include ill formed spans when predicting (79) ArneBinder
* Windowing for token classification (72) ArneBinder
* simplify transformer_token_classification_taskmodule (71) ArneBinder
* tests for TransformerTokenClassificationTaskModule (67) ArneBinder
* implement 63 (65) ArneBinder
* annotation getters default to None (64) (70) ChristophAlt
* implement windowing for text classification based rel (47) ArneBinder
* add tests for TransformerRETextClassificationTaskModule (58) ArneBinder
* create tests from the examples that check the actual pipeline output (59) ArneBinder
* pipeline: cleanup argument handling (57) ArneBinder
* Fix issue 51 (55) ChristophAlt
* show pipeline progress (48) ArneBinder
* implement serialize_brat() and add test for that and load_brat() (31) ArneBinder
* Unittests for TransformerSpanClassificationModel (38) ChristophAlt
* partitioning for TransformerRETextClassificationTaskModule (43) ArneBinder
* Fix remaining mypy errors (39) ChristophAlt
* fix stupid bug in TransformerTokenClassificationTaskModule introduced… (37) ArneBinder
* fix a lot of typing in mdules/ and taskmodules/ (33) ArneBinder
* fix TaskEncodingDataset: use correct base type (35) ArneBinder
* fix typing for data/ and core/ (32) ArneBinder
* Unittests for Taskmodule (34) ChristophAlt
* [WIP] Add transformer seq2seq model and taskmodule (28) ChristophAlt
* add and improve type annotations to taskmodules (27) ArneBinder
* fix encode_target for self.single_sentence=True (26) ArneBinder
* fix signature of TransformerSpanClassificationTaskModule.encode_target (24) ArneBinder
* add general DataModule and brat dataset (19) ArneBinder
* use consistent function names in taskmodule and pipeline (22) ArneBinder
* remove inplace doc modification (16) ArneBinder
:beetle: Fixes
* fix brat equivalence_relations (84) ArneBinder
* fix warnings for unaligened span (82) ArneBinder
* fix checks for required span annotations (81) ArneBinder
* fix decode (66) ArneBinder
* Fix brat serialization with newlines (61) ArneBinder
* fix label id creation for single_sentence=False in encode_input (45) ArneBinder
* fix issue 49 (50) ArneBinder
:construction_worker: Continuous Integration
* Properly configure coverage.py (90) ChristophAlt
* Add labeler and release-drafter to github workflow (88) ChristophAlt
* Prepare CI / CD pipeline for initial release (76) ChristophAlt
:books: Documentation
* Readme refactoring (96) ChristophAlt
:hammer: Refactoring
* refactor example test documents (89) ArneBinder
* move utility functions into own package (80) ArneBinder
:package: Dependencies
* Switch to src layout (92) ChristophAlt