Pyxtal

- Drop the dependency of numba
- Reset py3Dmol to be optional 225
- add the initial support of close packing plane detection 196
- Fix some bugs in crystal structure generation with the pre-assigned wps

- [Fix Cannot extract the right mapping from spglib](https://github.com/qzhu2017/PyXtal/commit/56aa4152fda73ac232e456f29bfcd169e1d5484c) https://github.com/qzhu2017/PyXtal/issues/228

- [Fix PyXtal Build](https://github.com/qzhu2017/PyXtal/commit/d813fc455615d1e2ac28323879817cff6bfdfe60) https://github.com/qzhu2017/PyXtal/issues/226
- [update the pymatgen pandas dependencies to speed up pip install](https://github.com/qzhu2017/PyXtal/commit/9fdb4ec509da6a97a239a3ae4fcfa427dcf32eff)
- [fix the coordination error](https://github.com/qzhu2017/PyXtal/commit/90eb141e2ecca30e1d09d9f436a5775c128cdedc)
- [fix build bug and add wp.short_distances function](https://github.com/qzhu2017/PyXtal/commit/8811df1e4a6913f8b7b903aa5ca6c5ab3d7a31ce)
- [try to create optional deps](https://github.com/qzhu2017/PyXtal/commit/4983c375d00a872317290832834858eff74ec86c)
- [fix the issue for speical site in mol xtal](https://github.com/qzhu2017/PyXtal/commit/c5e7a1466667973de8d8a9246b57ee7180043b60)
- [fix the generation issue by adjusting lattice more frequently](https://github.com/qzhu2017/PyXtal/commit/bdb030f00ad4dbbae8550d3640beb534bbbd9bc8) https://github.com/qzhu2017/PyXtal/issues/224

- [correct the get_dof fun](https://github.com/qzhu2017/PyXtal/commit/7ee24ef3dbc6592ae210ac67eb9c3724d2149941)
- [add more output in wp_lib](https://github.com/qzhu2017/PyXtal/commit/f8afb40b76b97397f2e585e7cc13f19b2a4bd0a2)
- [test py3.11+](https://github.com/qzhu2017/PyXtal/commit/f01596e62e1b4489032de32a3f12d78f8ff79b8e)
- [modify the gen_wp_lib function](https://github.com/qzhu2017/PyXtal/commit/9c6cd3f1239e3ab51902fcb5da90b82e30043cf6)
- [improve the build function](https://github.com/qzhu2017/PyXtal/commit/91ffe4097512fbe42db1553d116d44991c518723)

- [fix distance checker](https://github.com/qzhu2017/PyXtal/commit/4d8383e49aba5e55e58423fcdf68940388dabaff) https://github.com/qzhu2017/PyXtal/issues/218
- [modifty ase calculator](https://github.com/qzhu2017/PyXtal/commit/115dbc27296a3e5a4053baece195f8b71212bd23)
- [Fix typo in Tol_matrix.get_tol](https://github.com/qzhu2017/PyXtal/commit/0d0506a36e1770a45fb595fd894c6bdf1cfebaec)
- [fix the bug in pyxtal utility](https://github.com/qzhu2017/PyXtal/commit/6ccdc0d8bbc8d5c36fd92c6d84649543b8f50cb0)
- [add subgroup option](https://github.com/qzhu2017/PyXtal/commit/033739c2e85164025256193403a5ab7a3dea3a21)
- [update the wp_lib func](https://github.com/qzhu2017/PyXtal/commit/889da28991d6764582fadd73c4d902980dc7130f)
- [fix some issues in gulp calculator](https://github.com/qzhu2017/PyXtal/commit/fd23d80058dda41fcea07a900ea520bdfaea9c56)

- [add the symmetry option in gulp](https://github.com/qzhu2017/PyXtal/commit/84c67df32aae55b26ddf08e7383306aa45cf3bae)
- [modify gulp](https://github.com/qzhu2017/PyXtal/commit/c1f68554bcd325a0f6f3d55e5d8013afc9f51746)
- [fix some bugs](https://github.com/qzhu2017/PyXtal/commit/2db20171939fa202266796ebe60007aa67feb101)
- [add the option to exclude i-i interaction](https://github.com/qzhu2017/PyXtal/commit/4d5f071f2e26d3e3090d7629815fafd482730dd2)
- [update the representation function to get array](https://github.com/qzhu2017/PyXtal/commit/15fcec2a707c1497cb9068f14d8d9698e6cf5681)
- [distance checker bug in molecular crystals](https://github.com/qzhu2017/PyXtal/commit/1d1c2c85769aec659ecd177102748fd966bae923)
- [add generate_wp_lib func](https://github.com/qzhu2017/PyXtal/commit/3512353e96d8ebb953730c02c15822f5a3e0f856)
- [update lattice function](https://github.com/qzhu2017/PyXtal/commit/d540c92842602586aed693250c23f0fdbc7d69a3)

- [add an interface for dimensionality calc](https://github.com/qzhu2017/PyXtal/commit/43bd200ea5ae7b9927afe988a2c0173a8cfa19e3)
- [add the option to set coordination env](https://github.com/qzhu2017/PyXtal/commit/222ca919bef827844b5532dde332108ad7698c58)
- [add get_dofs for lattice](https://github.com/qzhu2017/PyXtal/commit/a224110ef3a9b07b6adddfd4e8a3751908166015)
- [add wp.get_label() function](https://github.com/qzhu2017/PyXtal/commit/84cd081a9c3afae6fca32ef61b226922fcdbabaa)
- [add resort(), lattice_dof, and improved gulp](https://github.com/qzhu2017/PyXtal/commit/a3ae3d8be0c26c86dda1bc2298163ba6e5f4dd29)
- [add the support to generate 1d-rep for atom sites](https://github.com/qzhu2017/PyXtal/commit/814a99d2eb9d0a6f7d6886290e436b7d682fe205)
- [add 1d-rep for lattice](https://github.com/qzhu2017/PyXtal/commit/6c7eb3ea2cebe941387438589b74de1a9bf20428)