Q2-micom

New interaction visualizations that allow tracking metabolite exchanges between taxa.

New visualization shwoing Metabolic Exchange Scores (MES).

Growth rates and taxon exchange plots now allow coloring by custom metadata columns.

`minimal-medium` now supports more options and outputs global and sample-specific media
by default. We also provide the results associated with the media optimization which can
help to inspect growth rates or required taxon-specific uptakes.

`plot-fit` got renamed to `association` and will not use LASSO coefficients anymore as
a proxy for univariate associations. Instead univariate non-parametric tests are run for
each metabolite. This should be more stable and avoid issues with low reproducibility of
coefficients. LASSO model performance is still reported as a global measure of
association. In case you need access to the previous plot-fit function you can simply
install a prior version of q2-micom (<0.14.0) in a Qiime 2 environment.

Some broad updates to the visualizations with updated dependencies and some visual updates
to avoid very squished plots.

Now uses the hybrid solver by default which gives better accuracy.

Fixes a bug where the build manifest would always report 100% matching.

Pins the MICOM versions to anticipate the transition from fit -> association.

Fixes the broken prefix trimming.

Now also reports the matched relative abundance in verbose build output.

Fixes issues with the new model databases due to automatic stripping of taxonomic rank
prefixes.

Switches the default solver to the new hybrid solver.

Updated the tutorial.