Qsiprep

Bugfixes and documentation

* Updates documentation for containers (270)
* Fixes a bug when reading fieldmap metadata from datalad inputs (271)
* Change incorrect option in the documentation (272)

Adds a new reconstruction workflow for the NODDI model.

* Adds NODDI reconstruction workflow (257). Thanks cookpa!
* Fixes issue with unequal aspect ratios in q-space plots (266)

* Adds a flag for a BIDS filter file 256
* Fixes a bug where --dwi-only is selected along with --intramodal-template

Many bugfixes

* Fix bug that produced flipped scalar images (251)
* Added a default working directory to prevent uninterpretable error message (250)
* Fix a bug in the `dipy_3dshore` reconstruction workflow (249)
* Remove hardlinking from DSI Studio interfaces (214)
* Add an option to use a BIDS database directory (247)
* Fix bug in interactive reports for HCP-style acquisitions (238)
* Update defaults for `Patch2Self` (230, 239)
* Remove cmake installer from docker image after compiling ANTS (229)

This version introduces major changes to the TOPUP/eddy workflow. Feedback would be greatly
appreciated!

* Added new algorithm for selecting b=0 images for distortion correction (202)
* Added the Patch2Self denoising method (203, credit to ShreyasFadnavis)
* Documentation has been expanded significantly (212)
* Boilerplate for DWI preprocessing is greatly expanded (200)

Adds options for processing infant dMRI data. Also enables running without a T1w
image.

* Adds ``--dwi-only`` and ``--infant`` options to QSIPrep. (177)