- Improved BIDS compliance: made session and run entities optional; added acq entity, improved argument parsing in CLI, now using derivatives directory for 'derived' types such as masks, segmentations and fieldmaps; also used suffixes correctly including `_Chimap`, `_fieldmap`, `_dseg` and `_mask`, including the `_desc-` entities when multiple derivatives are generated that would otherwise clash.
- Removed docs since they were difficult to maintain with minimal effort - the docstrings on the functions are good enough for now and the examples should make it clear how to use the software