Rapids-singlecell

Latest version: v0.12.1

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0.6.2

New Function
* added `.gr.ligrec` from *squidpy*

Updates
* removed `pp.calc_gene_qc`
* switched `pp.calculate_qc_metrics` to `cp.RawKernel`. Includes functionality from `pp.calc_gene_qc`
* switched `pp.highly_variable_genes` with `flavor='pearson_residuals'` to `cp.RawKernel`
* switched `pp.normalize_pearson_residuals` to `cp.RawKernel`
* added checks cundata.X and cunndata.layers for .nnz < 2**31-1 because of Cupy's indptr being locked to 32bit ints.

Other
* added `.pre-commit-config.yaml`
* added coding-style black

0.6.1

Changes:
* added missing dependency
* changes to typing in `squidpy_gpu`

0.6.0

Changes:
* Added support for spatial autocorrelation (`spatial_autocorr`) with `Moran's I` and `Geary's C`.
* changed some import to be more lightweight

0.5.1

Changes:
* improves `__getitem__` function
* fixed a small bug while creating `cunndata`
* changed to `calculate_qc_metrics` with log1p
* updates `calc_gene_qc` to be consistent with `calculate_qc_metrics`
* updates `filter_cells` and `filter_genes`
* updates docs
* updates Notebooks

0.5.0

added `docs`

Changes:
* added properties to `cunnData` for `.X`, `.obs`, `.var`, `.uns`,`.layers`, `.obsm`, `.varm`
* changed `.pp.plt_` to `.pl` for plotting functions
* fixed typo in `calculate_qc`
* changed import of functions and improved docstrings for documentation

0.4.2

Bugfixes:
* Fixed a bug where only the last layer of an AnnData objects was appended.
* Fixed a small error with the creation of the conda env

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