* (rapidtide) Report version on startup. Resolves https://github.com/bbfrederick/rapidtide/issues/91. * (Docker, package) Fixed version tagging and reporting. Resolves https://github.com/bbfrederick/rapidtide/issues/96. * (Docker) Moved some time consuming installations into basecontainer to make building new containers MUCH faster. * (package) Merged some dependabot security PRs. * (diffrois) Fixed handling of missing values.
2.6.4
Not secure
* Mass merge of more dependabot PRs. * (diffrois) Added a new program to make "vasculomes" - measuring delay differences between ROIs. This is still in flux. * (fingerprint, atlasaverage) Implemented a standard masking method with atlas indexed include and exclude masks, and an extra geometric mask. * (fingerprint) Bug fixes.
2.6.3
Not secure
* Mass merge of a bunch of dependabot PRs. * (rapidtide) Fixed return values from findavailablemem() when running in a Docker container with cgroups v1. Thank you to Jeffrey N Stout for finding this. Should resolve https://github.com/bbfrederick/rapidtide/issues/122. * (Docker) Updated to basecontainer 0.2.3.
2.6.2
Not secure
* (atlastool) Add ability to use ANTs alignments. * (atlasaverage) Add ability to restrict statistics to non-zero voxels. * (documentation) Started beefing up the "Theory of operation" section. * (Docker) Set memory limits on resource use when running in Docker containers so you don't get silent out of memory failures.
2.6.1
Not secure
* (rapidtide) Fixed crash when using ``--acfix`` option. Thanks to Jakub Szewczyk for spotting this. Should resolve https://github.com/bbfrederick/rapidtide/issues/115. * (atlasaverage) Added text region summary outputs. * (atlastool) Enhancing spatial registration options. * (package) Initial steps to implementing a more flexible way of applying external registration tools to data. * (package) Moving closer to a single pyproject.toml file with all the packaging information in it.: * (Docker) Updated to basecontainer 0.2.1 and added new cleanup operations - the container is now ~30% smaller.
2.6.0
Not secure
* (rapidtide) Added new ``--CVR`` analysis type to generate calibrated CVR maps when given a CO2 regressor as input. Thanks to Kristina Zvolanek for the suggestion to add it! * (rapidtide) Fixed calculation and output of variance change after GLM filtering. * (happy) Moved support functions into a separate file. * (simdata) Added separate voxel level and volume level noise specification, and a test script. * (documentation) Added information on CVR mapping outputs, updated funding information. * (package) Made ArgumentParser initialization uniform to make automatic documentation easier. * (package) Removed Python 3.7 support (mostly because it doesn't support all the features of f-strings I use.)