Read5

Changed

Extend getPolyAStandardizedSignal
- add mode change between median and mean
- standardization parameters can be added as parameters

Added
- getPolyAStandardizedSignal(self, readid : str, polyAstart : int, polyAend : int) -> np.ndarray

Standardize the read signal of the provided read with the polyA.
This function uses the median and mad to standardize the read with the polyA signal.
After standardization the polyA signal will have a mean of 108.901413 and a stdev of 2.676522.

Parameter
---------
readid : str
polyAstart : int
- included starting index of the polyA signal in the read

polyAend : int
- excluded ending index of the polyA signal in the read

Returns
-------
standardizedSignal : np.ndarray
- polyA standardized read signal

Changed
Update Versioneer
README fixes here and there

Added
- Created [https://github.com/JannesSP/read5_ont](https://github.com/JannesSP/read5_ont) without the slow5/pod5 support.
- But, Python3.11 support in conda

Changed Conda Recipe
- [pod5 is now installed via conda](https://anaconda.org/JannesSP/pod5) instead of pip

Move python requirements in setup.py to 'python_requires' instead of 'install_requires'

Add test files to sdist by adding "graft tests" to MANIFEST.in