Readfish-summarise

Highlights
A minor update to only conditionally set the `read_number` attribute on the `readfish` `Result` class if the attribute is present.
`readfish 2024.3.0` supports `MinKNOW >= 6.0` which has dropped the use of `read_number` in favour of `read_id`.
This version is still compatible with `readfish` versions `< 2024.3.0`

**Full Changelog**: https://github.com/Adoni5/ReadfishSummarise/compare/v0.2.6...v0.2.7

**Full Changelog**: https://github.com/Adoni5/ReadfishSummarise/compare/v0.2.5...v0.2.6

Features added
HTML output
With the addition of the `readfish-summarise fastq` `--html` flag, an HTML table version of the output will be written to the given filepath. This is disabled by default.

Example:

Bugs fixed
https://github.com/LooseLab/readfish/issues/285
Will catch a KeyError when looking up a channel number greater than the number of channels the Conf was initialised with (default 512), and suggest to set the `--prom` flag.

**Full Changelog**: https://github.com/Adoni5/ReadfishSummarise/compare/v0.2.4...v0.2.5

Changes

- This release fixes a bug with `alive-progress` and `pytest` on MacOS aarch64, which would fail the readfish stats test. The progress bar is now disabled if the `$CI` env variable is true.

- Empty gzipped FASTQ files are no longer produced if `demultiplexing` is enabled

**Full Changelog**: https://github.com/Adoni5/ReadfishSummarise/compare/v0.2.3...v0.2.4

Changes:
- Demultiplexing now happens in Rust
- All demultiplexed FASTQ is now gzipped

**Full Changelog**: https://github.com/Adoni5/ReadfishSummarise/compare/v0.2.2...v0.2.3

Features:
1. Progress bar using `alive_progress` https://github.com/rsalmei/alive-progress/tree/main
1. `--csv/--no-csv` to optionally output summary CSV
1. The default CSV name is {condition/contig}_readfish_stats.csv, with a different prefix providable by passing a `csv_prefix` to `print_summary()`

**Full Changelog**: https://github.com/Adoni5/ReadfishSummarise/compare/v0.2.1...v0.2.2