Renku

------

This release brings improvements and bug fixes to Renku Graph, Renku CLI, Amalthea, Sessions and Renku UI.

Features
~~~~~~~~~

* **Knowledge Graph**: New ``GET /knowledge-graph/ontology`` providing documentation for ontology used in KG
* **Knowledge Graph**: Cross-Entity Search resource to filter by namespaces (1075)
* **Knowledge Graph**: Dataset Details resource to indicate if Dataset was imported from a tag (1074)
* **Knowledge Graph**: A new Project Dataset's Tags API (1071)
* **Knowledge Graph**: Link to Dataset's Tags on the Dataset Details and Project's Datasets endpoints (1072)
* **Knowledge Graph**: Details about namespaces added to the Cross-Entity Search response (1070)
* **Knowledge Graph**: Info about creator's affiliation added to the Project Details response (1069)
* **Knowledge Graph**: A new User's Projects resource (1066)
* **Renku CLI**: Changed dataset logic to put all files into a dataset's data directory. Allow customizing a dataset's data directory
* **UI** improve session start flow (`1990 <https://github.com/SwissDataScienceCenter/renku-ui/issues/1990>`_, `#2003 <https://github.com/SwissDataScienceCenter/renku-ui/issues/2003>`_)

Bug fixes
~~~~~~~~~~

* **Knowledge Graph**: A process to retry all the events failed due to CLI version mismatch
* **Renku CLI**: Show SSH password prompt when using an SSH key with a password
* **UI** fix file tree display when changing to original project from fork (`1907 <https://github.com/SwissDataScienceCenter/renku-ui/issues/1907>`_, `#2015 <https://github.com/SwissDataScienceCenter/renku-ui/issues/2015>`_)
* **UI** prevent repeated queries to projects API (`2017 <https://github.com/SwissDataScienceCenter/renku-ui/issues/2017>`_)
* **UI** render star project button for anon users (`2014 <https://github.com/SwissDataScienceCenter/renku-ui/issues/2014>`_)
* **UI** restore back button navigation on projects for anon users (`2017 <https://github.com/SwissDataScienceCenter/renku-ui/issues/2017>`_)

Misc
~~~~~~~~~~

* **Knowledge Graph**: Renku CLI upgraded to 1.7.1
* **Knowledge Graph**: Jena upgraded to 4.6.0

Individual components
~~~~~~~~~~~~~~~~~~~~~~

----------------------------------------------------------------------------------------------------------

Bug Fixes
~~~~~~~~~

- **core:** Pin pyshacl version to 0.17.0.post1

----------------------------------------------------------------------------------------------------------

Bug Fixes
~~~~~~~~~

- **core:** Update to rdflib 6 and remove rdflib-jsonld which was not installable with ``setuptools>58.0.2``

----------------------------------------------------------------------------------------------------------

Bug Fixes
~~~~~~~~~

- **cli:** Fix Git LFS auto-commit hook not committing new pointer files
(`2139 <https://github.com/SwissDataScienceCenter/renku-python/issues/2139>`__)
(`dca5aa4 <https://github.com/SwissDataScienceCenter/renku-python/commit/dca5aa4b2baa22bbfd708de814a557b644015a77>`__)
- **cli:** prevent –template-ref from being set without –template-source in renku init
(`2146 <https://github.com/SwissDataScienceCenter/renku-python/issues/2146>`__)
(`e687b08 <https://github.com/SwissDataScienceCenter/renku-python/commit/e687b08f8152fac7a6d6eb3389dac054385ea4b9>`__)
- **core:** add url validator utility function to fix an issue with URLs containing
trailing slashes
(`2050 <https://github.com/SwissDataScienceCenter/renku-python/issues/2050>`__)
(`89f1c90 <https://github.com/SwissDataScienceCenter/renku-python/commit/89f1c90c711c2478b6e96d47107baab658242de0>`__),
- **core:** fix checking out template repository by revision
(`2189 <https://github.com/SwissDataScienceCenter/renku-python/issues/2189>`__)
(`2a69aa2 <https://github.com/SwissDataScienceCenter/renku-python/commit/2a69aa2656967f744c10c4beb3931b76d41e0954>`__),
- **core:** fix CWL to work with filenames with spaces
(`2187 <https://github.com/SwissDataScienceCenter/renku-python/issues/2187>`__)
(`634f2b3 <https://github.com/SwissDataScienceCenter/renku-python/commit/634f2b3e6709885639685ac9b989f46456dd8cdf>`__),
- **core:** fix Zenodo dataset import for datasets with schema:image set
(`2142 <https://github.com/SwissDataScienceCenter/renku-python/issues/2142>`__)
(`06d4969 <https://github.com/SwissDataScienceCenter/renku-python/commit/06d4969cc703eaf9ea884df61e51aba9e48b6e85>`__)
- **core:** fix duplicate project version in flattened JSON-LD
(`2087 <https://github.com/SwissDataScienceCenter/renku-python/issues/2087>`__)
(`e28e308 <https://github.com/SwissDataScienceCenter/renku-python/commit/e28e3085f60089d4a8d5d6cb33453322531ae6b8>`__)
- **service:** fix management jobs running into timeouts
(`2127 <https://github.com/SwissDataScienceCenter/renku-python/issues/2127>`__)
(`ab7ca08 <https://github.com/SwissDataScienceCenter/renku-python/commit/ab7ca0801c0e4bc43d5369843b4ee8176d242609>`__)

Features
~~~~~~~~

- **core:** add ``group`` and ``remove`` subcommand to ``graph workflow``
(`2177 <https://github.com/SwissDataScienceCenter/renku-python/issues/2177>`__)
(`221aeba <https://github.com/SwissDataScienceCenter/renku-python/commit/221aebab394ca80dc9320c5c023a2852b0e47006>`__)
- **core:** add renku version as a project template parameter
(`2145 <https://github.com/SwissDataScienceCenter/renku-python/issues/2145>`__)
(`0e9b132 <https://github.com/SwissDataScienceCenter/renku-python/commit/0e9b132858b2de1440b0e7e2b598ba4d63fe002c>`__)
- **core:** git login from CLI
(`2045 <https://github.com/SwissDataScienceCenter/renku-python/issues/2045>`__)
(`1d7147d <https://github.com/SwissDataScienceCenter/renku-python/commit/1d7147df66f245a50a6a9eaa487e2708e7363672>`__)
- **core:** include parameter values in provenance
(`2093 <https://github.com/SwissDataScienceCenter/renku-python/issues/2093>`__)
(`84b6d0f <https://github.com/SwissDataScienceCenter/renku-python/commit/84b6d0f448161f33a3caa1b9631ae47840d648c6>`__)
- **docs:** new design based on `Renku Sphinx Theme <https://github.com/SwissDataScienceCenter/renku-sphinx-theme>`__
(`2204 <https://github.com/SwissDataScienceCenter/renku-python/issues/2204>`__)
(`eaa19f0 <https://github.com/SwissDataScienceCenter/renku-python/commit/eaa19f072d683cc0674fd9233f432cb9b75a2bab>`__)

----------------------------------------------------------------------------------------------------------

Bug Fixes
~~~~~~~~~

- **core:** remove locking from core read operations
(`2099 <https://github.com/SwissDataScienceCenter/renku-python/issues/2099>`__)
(`4407808 <https://github.com/SwissDataScienceCenter/renku-python/commit/440780887983e8f949c6a2d909996f344ef24096>`__)
- **service:** fix service project creation
(`2092 <https://github.com/SwissDataScienceCenter/renku-python/issues/2092>`__)
(`48d518f <https://github.com/SwissDataScienceCenter/renku-python/commit/48d518fda687003991852aad348a7edc99794e74>`__)

----------------------------------------------------------------------------------------------------------

Bug Fixes
~~~~~~~~~

- **core:** Fix annotations serialization in ProvenanceGraph
(`1992 <https://github.com/SwissDataScienceCenter/renku-python/issues/1992>`__)
(`eb3a7ba <https://github.com/SwissDataScienceCenter/renku-python/commit/eb3a7ba600b4b4858df77e1986caea9dc5ba565d>`__),
closes
`1952 <https://github.com/SwissDataScienceCenter/renku-python/issues/1952>`__
- **core:** no failure when processing git history for deleted files
(`2047 <https://github.com/SwissDataScienceCenter/renku-python/issues/2047>`__)
(`d85facd <https://github.com/SwissDataScienceCenter/renku-python/commit/d85facd1b8a1f2c5e8ed874afe0d79063c7dc499>`__)
- **cli:** fix path matching in renku log dot output
(`2070 <https://github.com/SwissDataScienceCenter/renku-python/issues/2070>`__)
(`4a4342b <https://github.com/SwissDataScienceCenter/renku-python/commit/4a4342b6004e9632f38e7eaa13fe6567051c0b72>`__)

Features
~~~~~~~~

- **cli:** improve feedback around files being overwritten by renku
init and add --initial-branch flag
(`1997 <https://github.com/SwissDataScienceCenter/renku-python/issues/1997>`__)
(`50bb67b <https://github.com/SwissDataScienceCenter/renku-python/commit/50bb67b65489bb75be29acb3fb8a3cdec65ad611>`__)
- **cli:** add JSON output format to ‘renku dataset ls’ and ‘renku
dataset ls-files’
(`2084 <https://github.com/SwissDataScienceCenter/renku-python/issues/2084>`__)
(`514f13b <https://github.com/SwissDataScienceCenter/renku-python/commit/514f13b1f34d4d22beb0e69425136670f5c94beb>`__)
- **cli:** add OLOS export and improve import/export provider logic
(`1857 <https://github.com/SwissDataScienceCenter/renku-python/issues/1857>`__)
(`779c481 <https://github.com/SwissDataScienceCenter/renku-python/commit/779c4816a8e994526255a78a7163afb45ea79cd2>`__)
- **cli:** detect filename from content-disposition header when
downloading
(`2020 <https://github.com/SwissDataScienceCenter/renku-python/issues/2020>`__)
(`c79ea14 <https://github.com/SwissDataScienceCenter/renku-python/commit/c79ea148d7f08cd45085b5918144fdff7c3d161b>`__)
- **core:** add default value to all Run parameters
(`2057 <https://github.com/SwissDataScienceCenter/renku-python/issues/2057>`__)
(`3a0321d <https://github.com/SwissDataScienceCenter/renku-python/commit/3a0321d3443c8226abbc534b2ddee0f4f54aa4c0>`__)
- **core:** adds ``node-js`` detection for rerun/update
(`2002 <https://github.com/SwissDataScienceCenter/renku-python/issues/2002>`__)
(`8b9e801 <https://github.com/SwissDataScienceCenter/renku-python/commit/8b9e801718413763d17fbbc4c22212a0f8263013>`__)
- **core:** add renku login command to authenticate with a renku
deployment
(`1864 <https://github.com/SwissDataScienceCenter/renku-python/issues/1864>`__)
(`7f3039f <https://github.com/SwissDataScienceCenter/renku-python/commit/7f3039f470558a157a5c0a8b45fa2dd6b77eb1d3>`__)
- **dataset:** add support to dataset update for detecting changes
to local files
(`2049 <https://github.com/SwissDataScienceCenter/renku-python/issues/2049>`__)
(`71befe0 <https://github.com/SwissDataScienceCenter/renku-python/commit/71befe0303684bd790fb36c0f77630ac262ff05d>`__)
- **service:** pass gitlab token to core-service
(`2062 <https://github.com/SwissDataScienceCenter/renku-python/issues/2062>`__)
(`63c2675 <https://github.com/SwissDataScienceCenter/renku-python/commit/63c2675859ae24eef32afa6f7a267e244000495c>`__)
- **workflow:** add naming metadata for command parameters
(`2071 <https://github.com/SwissDataScienceCenter/renku-python/issues/2071>`__)
(`b1e7a9b <https://github.com/SwissDataScienceCenter/renku-python/commit/b1e7a9b2913883de8c8d4f76a7fbd75a2e036ab5>`__)
- **workflow:** add workflow naming metadata
(`2033 <https://github.com/SwissDataScienceCenter/renku-python/issues/2033>`__)
(`5612199 <https://github.com/SwissDataScienceCenter/renku-python/commit/5612199e5ade9d7a6ea2937f87be8adb7b8de19a>`__)
- **service:** add delayed write operations, i.e. porcelain and better cache management
(`1957 <https://github.com/SwissDataScienceCenter/renku-python/issues/1957>`__)
(`a05b615 <https://github.com/SwissDataScienceCenter/renku-python/commit/a05b6158a79a7ee85828487ae2194746c3409d46>`__)