Resolwe-bio

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Added
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- Fail if wrong filtering arguments are used in KB Feature / Mapping
search endpoints

Changed
-------
- Use Amazon ECR when building ``resolwebio/base`` Docker images
- Use pinned version of the ``resolwebio/base`` Docker image for
building ``resolwebio/common`` Docker image. Update versions of
bioinformatic tools installed in the ``resolwebio/common`` image.
- Use only tagged versions of ``resolwebio/base`` Docker images in
processes
- Save gene-level estimated counts to the ``rc`` output field in the
``salmon-quant`` process

Fixed
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- Fix file import in processes ``upload-multiplexed-single`` and
``upload-multiplexed-paired``
- Fix ``import-sra-single`` and ``import-sra-paired`` to correctly
determine Illumina 1.5 and 1.3 quality encoding


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Changed
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- **BACKWARD INCOMPATIBLE:** Require Resolwe 27.x
- Move docker images from Docker Hub to Amazon ECR


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Added
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- Add OncXerna specific clinical descriptor schema ``oncxerna_clinical``

Changed
-------
- **BACKWARD INCOMPATIBLE:** Support new protocol in Resolwe 26.x


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Added
-------
- Add initial general clinical descriptor schema ``general_clinical``
- Add ``id`` field to ``Feature`` and ``Mapping`` serializers
- Add ``resolwebio/base:ubuntu-20.04`` Docker image

Changed
-------
- Update the url for the Orange table example template in
``upload-orange-metadata``


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Fixed
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- Fix ``macs2-callpeak`` process version


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Added
-------
- Add ``upload-proteomics-sample`` and ``upload-proteomics-sample-set``
processes for uploading custom tables holding proteomics data

Fixed
-------
- Changed ``scale-bigwig`` output file field label to ``bigwig file``
- Bump memory requirements in processes ``import-sra``,
``import-sra-single`` and ``import-sra-paired`` to 8GB


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