Sbol-utilities

Early release of SBOL Utilities with four utilities:
- `graph-sbol` uses graphviz to render the object tree in an SBOL Document.
- `excel-to-sbol` extracts SBOL parts and libraries from an Excel file (an SBOL3 version of the [SBOL2 Excel-to-SBOL utility](https://github.com/SynBioDex/Excel-to-SBOL))
- `sbol-expand-derivations` searches through an SBOL file for CombinatorialDerivation objects and expands them to create a library of all of the specific constructs.
- `sbol-calculate-sequences` attempts to calculate the sequence of any DNA Component that can be fully specified from the sequences of its sub-components.

In addition, for python users SBOL Utilities provides `sequence` and `component` packages to simplify common tasks with those types of objects.

This is a patch release handling updates in pySBOL3 1.0a8. Specifically:
- Fix breaking changes from pySBOL3 1.0a7 to 1.0a8
- Move id_sort from workarounds to helper_functions
- Deprecate workarounds that are no longer needed

Early release of SBOL Utilities with four utilities:
- `graph-sbol` uses graphviz to render the object tree in an SBOL Document.
- `excel-to-sbol` extracts SBOL parts and libraries from an Excel file (an SBOL3 version of the [SBOL2 Excel-to-SBOL utility](https://github.com/SynBioDex/Excel-to-SBOL))
- `sbol-expand-derivations` searches through an SBOL file for CombinatorialDerivation objects and expands them to create a library of all of the specific constructs.
- `sbol-calculate-sequences` attempts to calculate the sequence of any DNA Component that can be fully specified from the sequences of its sub-components.

In addition, for python users SBOL Utilities provides `sequence` and `component` packages to simplify common tasks with those types of objects.

New this release:
- Compatibility for python 3.7 forward
- New `sequence` and `component` packages with higher level functions for working with those types of objects
- Migration of many `helper_functions` into `sequence` and `workarounds` packages _not backward compatible_
- Fix an `excel-to-sbol` bug with sequence identities
- Unpin required pySBOL3 version

Early release of SBOL Utilities with four utilities:
- `graph-sbol` uses graphviz to render the object tree in an SBOL Document.
- `excel-to-sbol` extracts SBOL parts and libraries from an Excel file (an SBOL3 version of the [SBOL2 Excel-to-SBOL utility](https://github.com/SynBioDex/Excel-to-SBOL))
- `sbol-expand-derivations` searches through an SBOL file for CombinatorialDerivation objects and expands them to create a library of all of the specific constructs.
- `sbol-calculate-sequences` attempts to calculate the sequence of any DNA Component that can be fully specified from the sequences of its sub-components.

New this release:
- `excel-to-sbol` supports sourcing of GenBank and FASTA from arbitrary URLs, trims extensions
- Additional helper functions for file extensions and identity manipulations

Early release of SBOL Utilities with four utilities:
- `graph-sbol` uses graphviz to render the object tree in an SBOL Document.
- `excel-to-sbol` extracts SBOL parts and libraries from an Excel file (an SBOL3 version of the [SBOL2 Excel-to-SBOL utility](https://github.com/SynBioDex/Excel-to-SBOL))
- `sbol-expand-derivations` searches through an SBOL file for CombinatorialDerivation objects and expands them to create a library of all of the specific constructs.
- `sbol-calculate-sequences` attempts to calculate the sequence of any DNA Component that can be fully specified from the sequences of its sub-components.

New this release:
- MIT license
- Version pin on pySBOL3 dependency

Early release of SBOL Utilities with four utilities:
- `graph-sbol` uses graphviz to render the object tree in an SBOL Document.
- `excel-to-sbol` extracts SBOL parts and libraries from an Excel file (an SBOL3 version of the [SBOL2 Excel-to-SBOL utility](https://github.com/SynBioDex/Excel-to-SBOL))
- `sbol-expand-derivations` searches through an SBOL file for CombinatorialDerivation objects and expands them to create a library of all of the specific constructs.
- `sbol-calculate-sequences` attempts to calculate the sequence of any DNA Component that can be fully specified from the sequences of its sub-components.

New this release:
- `sbol-calculate-sequences` utility
- smarter handling of extensions

Early release of SBOL Utilities with three utilities:
- `graph-sbol` uses graphviz to render the object tree in an SBOL Document.
- `excel-to-sbol` extracts SBOL parts and libraries from an Excel file (an SBOL3 version of the [SBOL2 Excel-to-SBOL utility](https://github.com/SynBioDex/Excel-to-SBOL))
- `sbol-expand-derivations` searches through an SBOL file for CombinatorialDerivation objects and expands them to create a library of all of the specific constructs.

New this release:
- support for direct use of SynBioHub as a source in excel-to-sbol
- helper function for stripping SBOL2 versions from URIs