Sc-toolbox

Changes

🐛 Bug Fixes

* fix: docs styling (32) Imipenem
* fix genotype_genotype_umaps drawing Zethson

:package: Dependencies

* [DEPENDABOT]: Bump rich from 10.1.0 to 10.2.0 (41) dependabot
* [DEPENDABOT]: Bump actions/checkout from 2 to 2.3.4 (40) dependabot
* [DEPENDABOT]: Bump peaceiris/actions-gh-pages from 3 to 3.8.0 (38) dependabot
* [DEPENDABOT]: Bump actions/setup-python from 2 to 2.2.2 (39) dependabot
* [DEPENDABOT]: Bump black from 21.5b0 to 21.5b1 (37) dependabot
* [DEPENDABOT]: Bump reorder-python-imports from 2.4.0 to 2.5.0 (34) dependabot
* [DEPENDABOT]: Bump flake8 from 3.9.1 to 3.9.2 (35) dependabot
* [DEPENDABOT]: Bump pytest from 6.2.3 to 6.2.4 (27) dependabot
* [DEPENDABOT]: Bump matplotlib from 3.4.1 to 3.4.2 (29) dependabot

Changes

🚀 Features

* Genotype vs genotype UMAPs (30) Zethson
* Annotated celltype umap (28) Zethson
* Contributing guide (27) Zethson

:package: Dependencies

* [DEPENDABOT]: Bump flake8 from 3.9.0 to 3.9.1 (15) dependabot
* [DEPENDABOT]: Bump black from 20.8b1 to 21.5b0 (25) dependabot
* [DEPENDABOT]: Bump pygments from 2.8.1 to 2.9.0 (26) dependabot
* [DEPENDABOT]: Bump scikit-learn from 0.24.1 to 0.24.2 (17) dependabot
* [DEPENDABOT]: Bump flake8-rst-docstrings from 0.0.14 to 0.2.3 (22) dependabot
* [DEPENDABOT]: Bump codecov/codecov-action from v1.4.1 to v1.5.0 (23) dependabot
* [DEPENDABOT]: Bump sphinx from 3.5.3 to 3.5.4 in /docs (14) dependabot
* [DEPENDABOT]: Bump pre-commit from 2.12.0 to 2.12.1 (18) dependabot
* [DEPENDABOT]: Bump codecov/codecov-action from v1.3.2 to v1.4.1 (12) dependabot
* [DEPENDABOT]: Bump sphinx from 3.5.3 to 3.5.4 (19) dependabot
* [DEPENDABOT]: Bump actions/cache from v2.1.4 to v2.1.5 (13) dependabot
* [DEPENDABOT]: Bump pytest from 6.2.3 to 6.2.4 (27) dependabot
* [DEPENDABOT]: Bump matplotlib from 3.4.1 to 3.4.2 (29) dependabot

* colormaps are now accessible from sct.plot.Colormaps.<COLORMAP>

Changes

* Renamed the plotting functions by removing the 'plot' prefixes

This is an unstable release and things are subject to change

🚀 Features

* Add all of MAs scripts
* Add create command to create projects based on templates (4) Zethson
* Add preview images in README (3) Zethson