Releasing version 0.2.0 of scaffold maker.
What's Changed
* Improve and complete heart base elements by rchristie in https://github.com/ABI-Software/scaffoldmaker/pull/1
* Improve default options for ventricles and base by rchristie in https://github.com/ABI-Software/scaffoldmaker/pull/2
* Comment out debug print statements by rchristie in https://github.com/ABI-Software/scaffoldmaker/pull/3
* Add Scaffoldmaker class, atria mesh by rchristie in https://github.com/ABI-Software/scaffoldmaker/pull/4
* Close atria, add outlets by rchristie in https://github.com/ABI-Software/scaffoldmaker/pull/5
* Add refinement to trilinear elements by rchristie in https://github.com/ABI-Software/scaffoldmaker/pull/7
* Add new ventricles2 scaffold by rchristie in https://github.com/ABI-Software/scaffoldmaker/pull/8
* Started ventricles base 2 by rchristie in https://github.com/ABI-Software/scaffoldmaker/pull/9
* Close ventriclesbase2 by rchristie in https://github.com/ABI-Software/scaffoldmaker/pull/10
* Reduce distortion at septum by right atria by rchristie in https://github.com/ABI-Software/scaffoldmaker/pull/11
* Add annotation groups for ventricles 2 by rchristie in https://github.com/ABI-Software/scaffoldmaker/pull/12
* Add atria 2 scaffold by rchristie in https://github.com/ABI-Software/scaffoldmaker/pull/15
* Add full heart merging ventricles, base and atria by rchristie in https://github.com/ABI-Software/scaffoldmaker/pull/16
* Add solid sphere scaffold by mlin865 in https://github.com/ABI-Software/scaffoldmaker/pull/17
* Fix defaults and limits for number of elements around and up by mlin865 in https://github.com/ABI-Software/scaffoldmaker/pull/18
* Add new atria1 by rchristie in https://github.com/ABI-Software/scaffoldmaker/pull/20
* Lens by mlin865 in https://github.com/ABI-Software/scaffoldmaker/pull/21
* Rename Scaffoldmaker class for Python 2 import by rchristie in https://github.com/ABI-Software/scaffoldmaker/pull/22
* Linear basis through wall for sphere shell by mlin865 in https://github.com/ABI-Software/scaffoldmaker/pull/23
* Add new heartventricles1 scaffold by rchristie in https://github.com/ABI-Software/scaffoldmaker/pull/24
* Separate variable interpolation from cubic sampling by rchristie in https://github.com/ABI-Software/scaffoldmaker/pull/25
* Add choice of arithmetic or harmonic mean derivatives by rchristie in https://github.com/ABI-Software/scaffoldmaker/pull/26
* Central line tube mesh by mlin865 in https://github.com/ABI-Software/scaffoldmaker/pull/28
* Add new heart1 scaffold by rchristie in https://github.com/ABI-Software/scaffoldmaker/pull/29
* Add heart fiducial marker annotation points by rchristie in https://github.com/ABI-Software/scaffoldmaker/pull/30
* Add unit scale parameter by rchristie in https://github.com/ABI-Software/scaffoldmaker/pull/31
* Partial arterial root by rchristie in https://github.com/ABI-Software/scaffoldmaker/pull/32
* Add cusps to heart arterial root by rchristie in https://github.com/ABI-Software/scaffoldmaker/pull/33
* Human stomach by rchristie in https://github.com/ABI-Software/scaffoldmaker/pull/34
* 3D Human stomach by Jagirhussan in https://github.com/ABI-Software/scaffoldmaker/pull/19
* Function for exporting scaffolds to vtk by rchristie in https://github.com/ABI-Software/scaffoldmaker/pull/35
* Allow 1 or 2 left and right pulmonary veins by rchristie in https://github.com/ABI-Software/scaffoldmaker/pull/36
* Improved compatibility with python 2.7 by fowlkes in https://github.com/ABI-Software/scaffoldmaker/pull/37
* Support multiple parameter sets, add scaffold base class by rchristie in https://github.com/ABI-Software/scaffoldmaker/pull/38
* Improve convergence when finding xi from arc distance by rchristie in https://github.com/ABI-Software/scaffoldmaker/pull/40
* Correctly simplify the installation process. by metatoaster in https://github.com/ABI-Software/scaffoldmaker/pull/13
* Add scipy and numpy to required packages and change ZincPythonTools a… by alan-wu in https://github.com/ABI-Software/scaffoldmaker/pull/41
* Remove files that are no longer needed and update instruction. by alan-wu in https://github.com/ABI-Software/scaffoldmaker/pull/42
* Revisions based on comments from Colon Pull request 43 by mlin865 in https://github.com/ABI-Software/scaffoldmaker/pull/44
* Add rat, mouse heart parameters by rchristie in https://github.com/ABI-Software/scaffoldmaker/pull/45
* Texture coordinates by mlin865 in https://github.com/ABI-Software/scaffoldmaker/pull/46
* Add sub-scaffolds by rchristie in https://github.com/ABI-Software/scaffoldmaker/pull/47
* Tenia coli by mlin865 in https://github.com/ABI-Software/scaffoldmaker/pull/48
* Scale d2 along mesh with curvature of central line by mlin865 in https://github.com/ABI-Software/scaffoldmaker/pull/49
* Implement cross-axis by mlin865 in https://github.com/ABI-Software/scaffoldmaker/pull/50
* Add single/double ostium scaffold by rchristie in https://github.com/ABI-Software/scaffoldmaker/pull/51
* Parameters for human 1 and 2 by mlin865 in https://github.com/ABI-Software/scaffoldmaker/pull/52
* Mouse colon by mlin865 in https://github.com/ABI-Software/scaffoldmaker/pull/54
* Pig colon by mlin865 in https://github.com/ABI-Software/scaffoldmaker/pull/55
* Replace heart atria, improve parameters for all species by rchristie in https://github.com/ABI-Software/scaffoldmaker/pull/56
* Rename data fields to fiducial by rchristie in https://github.com/ABI-Software/scaffoldmaker/pull/57
* Serialise bytes string to JSON by rchristie in https://github.com/ABI-Software/scaffoldmaker/pull/58
* Vary inner radius and tenia coli width along colon length by mlin865 in https://github.com/ABI-Software/scaffoldmaker/pull/59
* Put source under src folder, add test by rchristie in https://github.com/ABI-Software/scaffoldmaker/pull/60
* Tests for colon and colon segment meshtypes by mlin865 in https://github.com/ABI-Software/scaffoldmaker/pull/61
* Small intestine scaffold by mlin865 in https://github.com/ABI-Software/scaffoldmaker/pull/63
* Move most zinc_utils to opencmiss.utils by rchristie in https://github.com/ABI-Software/scaffoldmaker/pull/64
* Bladder scaffold by zekh167 in https://github.com/ABI-Software/scaffoldmaker/pull/62
* removed indentation for lines of unittest by zekh167 in https://github.com/ABI-Software/scaffoldmaker/pull/65
* Improve annotation groups by rchristie in https://github.com/ABI-Software/scaffoldmaker/pull/66
* projection has been done by zekh167 in https://github.com/ABI-Software/scaffoldmaker/pull/67
* Implement phase by mlin865 in https://github.com/ABI-Software/scaffoldmaker/pull/68
* Improve annotations, refinement and VTK export by rchristie in https://github.com/ABI-Software/scaffoldmaker/pull/70
* Transformations in ScaffoldPackage by rchristie in https://github.com/ABI-Software/scaffoldmaker/pull/71
* Remove auricles from atria groups by rchristie in https://github.com/ABI-Software/scaffoldmaker/pull/73
* Bladder annotation by zekh167 in https://github.com/ABI-Software/scaffoldmaker/pull/72
* Improve rat heart by rchristie in https://github.com/ABI-Software/scaffoldmaker/pull/74
* Improve rat heart after scale fix by rchristie in https://github.com/ABI-Software/scaffoldmaker/pull/75
* Fix heart test, opencmiss.utils version by rchristie in https://github.com/ABI-Software/scaffoldmaker/pull/77
* Cecum by mlin865 in https://github.com/ABI-Software/scaffoldmaker/pull/76
* Bifurcation tree and tube fork by rchristie in https://github.com/ABI-Software/scaffoldmaker/pull/78
* Pig colon by mlin865 in https://github.com/ABI-Software/scaffoldmaker/pull/79
* Multiple annotation groups by mlin865 in https://github.com/ABI-Software/scaffoldmaker/pull/80
* Heart ventricles 3 and arterial valves by rchristie in https://github.com/ABI-Software/scaffoldmaker/pull/81
* Fix 2D VTK export by rchristie in https://github.com/ABI-Software/scaffoldmaker/pull/82
* Add user-defined annotation groups by rchristie in https://github.com/ABI-Software/scaffoldmaker/pull/83
* Annotation fix by rchristie in https://github.com/ABI-Software/scaffoldmaker/pull/87
* Add functions to update user annotation groups by rchristie in https://github.com/ABI-Software/scaffoldmaker/pull/88
* Generalised cylinder by elias-soltani in https://github.com/ABI-Software/scaffoldmaker/pull/86
* Stellate by s-fong in https://github.com/ABI-Software/scaffoldmaker/pull/89
* Add subelements to user annotation groups by rchristie in https://github.com/ABI-Software/scaffoldmaker/pull/90
* Add scaffold interactive functions by rchristie in https://github.com/ABI-Software/scaffoldmaker/pull/91
* Annotation by s-fong in https://github.com/ABI-Software/scaffoldmaker/pull/92
* Path1/sidederivatives by elias-soltani in https://github.com/ABI-Software/scaffoldmaker/pull/93
* Bladder urethra by zekh167 in https://github.com/ABI-Software/scaffoldmaker/pull/85
* Fix ScaffoldPackage deepcopy and meshedits by rchristie in https://github.com/ABI-Software/scaffoldmaker/pull/96
* Add path smooth cross derivatives function by rchristie in https://github.com/ABI-Software/scaffoldmaker/pull/97
* Fix 1 element smoothing by rchristie in https://github.com/ABI-Software/scaffoldmaker/pull/98
* Cylinder/central path by elias-soltani in https://github.com/ABI-Software/scaffoldmaker/pull/94
* Rescale derivatives for annulus mesh by mlin865 in https://github.com/ABI-Software/scaffoldmaker/pull/100
* Parameter sets by s-fong in https://github.com/ABI-Software/scaffoldmaker/pull/99
* Lungs by zekh167 in https://github.com/ABI-Software/scaffoldmaker/pull/101
* Add mesh refinement to lung by rchristie in https://github.com/ABI-Software/scaffoldmaker/pull/102
* Add human lung lower lobe by arti-sukasem in https://github.com/ABI-Software/scaffoldmaker/pull/103
* Fix atria shape distortions by rchristie in https://github.com/ABI-Software/scaffoldmaker/pull/104
* Update both lower and upper lobes in the left human. by arti-sukasem in https://github.com/ABI-Software/scaffoldmaker/pull/105
* Set fitted human lung parameters by rchristie in https://github.com/ABI-Software/scaffoldmaker/pull/107
* Global field derivative smoothing by rchristie in https://github.com/ABI-Software/scaffoldmaker/pull/106
* Wedge by mlin865 in https://github.com/ABI-Software/scaffoldmaker/pull/109
* Smooth derivative directions, add function options by rchristie in https://github.com/ABI-Software/scaffoldmaker/pull/110
* Fix boundary derivative smoothing by rchristie in https://github.com/ABI-Software/scaffoldmaker/pull/112
* Bladder updated by zekh167 in https://github.com/ABI-Software/scaffoldmaker/pull/108
* Added left lung parameters. by zekh167 in https://github.com/ABI-Software/scaffoldmaker/pull/114
* Right lung in a human by arti-sukasem in https://github.com/ABI-Software/scaffoldmaker/pull/113
* Cylinder/rim by elias-soltani in https://github.com/ABI-Software/scaffoldmaker/pull/111
* Sharpen anterior edges of left and right human lungs by arti-sukasem in https://github.com/ABI-Software/scaffoldmaker/pull/115
* Cattle intestines by mlin865 in https://github.com/ABI-Software/scaffoldmaker/pull/119
* Right and accessory lungs by arti-sukasem in https://github.com/ABI-Software/scaffoldmaker/pull/118
* Bifurcation tree start by rchristie in https://github.com/ABI-Software/scaffoldmaker/pull/121
* Bladder dorsal ventral by zekh167 in https://github.com/ABI-Software/scaffoldmaker/pull/120
* Cylinder/circular core by elias-soltani in https://github.com/ABI-Software/scaffoldmaker/pull/116
* Fix unused scale factor bugs by rchristie in https://github.com/ABI-Software/scaffoldmaker/pull/126
* Fix annulus start/end mapping by rchristie in https://github.com/ABI-Software/scaffoldmaker/pull/127
* Bodycoordinates by elias-soltani in https://github.com/ABI-Software/scaffoldmaker/pull/123
* Left atria PV annulus changes by rchristie in https://github.com/ABI-Software/scaffoldmaker/pull/133
* Stomach by mlin865 in https://github.com/ABI-Software/scaffoldmaker/pull/132
* created lung fissure annotation by arti-sukasem in https://github.com/ABI-Software/scaffoldmaker/pull/135
* Added four fiducial points. by zekh167 in https://github.com/ABI-Software/scaffoldmaker/pull/125
* added marker points for both human and mouse, updated mouse parameter… by arti-sukasem in https://github.com/ABI-Software/scaffoldmaker/pull/138
* Heart terms by rchristie in https://github.com/ABI-Software/scaffoldmaker/pull/140
* Human bladder by zekh167 in https://github.com/ABI-Software/scaffoldmaker/pull/137
* Added Rat lung mesh parameters by arti-sukasem in https://github.com/ABI-Software/scaffoldmaker/pull/139
* Fix tests by rchristie in https://github.com/ABI-Software/scaffoldmaker/pull/141
* Remove ZincPythonTools dependency by rchristie in https://github.com/ABI-Software/scaffoldmaker/pull/142
* added laterodorsal tip of the middle lobe to rat and mouse mesh by arti-sukasem in https://github.com/ABI-Software/scaffoldmaker/pull/143
* Updated mouse parameters and ILX for lung terms by arti-sukasem in https://github.com/ABI-Software/scaffoldmaker/pull/144
* Brainstem by s-fong in https://github.com/ABI-Software/scaffoldmaker/pull/128
* Created parameters for rat and human by arti-sukasem in https://github.com/ABI-Software/scaffoldmaker/pull/146
* Embed organ landmarks by elias-soltani in https://github.com/ABI-Software/scaffoldmaker/pull/145
* Increment version number by rchristie in https://github.com/ABI-Software/scaffoldmaker/pull/147
* Bladder ilx by zekh167 in https://github.com/ABI-Software/scaffoldmaker/pull/148
* Mouse brainstem by arti-sukasem in https://github.com/ABI-Software/scaffoldmaker/pull/149
* Flat stomach by mlin865 in https://github.com/ABI-Software/scaffoldmaker/pull/151
* Update bladder terms by elias-soltani in https://github.com/ABI-Software/scaffoldmaker/pull/152
* Add parameter sets for mouse and pig bladder by keeran97 in https://github.com/ABI-Software/scaffoldmaker/pull/153
* Colon coordinates by mlin865 in https://github.com/ABI-Software/scaffoldmaker/pull/157
* Add ILX for inner surface of colonic mucosa by mlin865 in https://github.com/ABI-Software/scaffoldmaker/pull/160
* Update inner surface of colonic mucosa with edits from SAWG by mlin865 in https://github.com/ABI-Software/scaffoldmaker/pull/161
* opencmiss.maths fixes by rchristie in https://github.com/ABI-Software/scaffoldmaker/pull/162
* Optimise imports and perform some PEP8 fixes. by hsorby in https://github.com/ABI-Software/scaffoldmaker/pull/165
New Contributors
* rchristie made their first contribution in https://github.com/ABI-Software/scaffoldmaker/pull/1
* Jagirhussan made their first contribution in https://github.com/ABI-Software/scaffoldmaker/pull/19
* fowlkes made their first contribution in https://github.com/ABI-Software/scaffoldmaker/pull/37
* metatoaster made their first contribution in https://github.com/ABI-Software/scaffoldmaker/pull/13
* alan-wu made their first contribution in https://github.com/ABI-Software/scaffoldmaker/pull/41
* zekh167 made their first contribution in https://github.com/ABI-Software/scaffoldmaker/pull/62
* s-fong made their first contribution in https://github.com/ABI-Software/scaffoldmaker/pull/89
* arti-sukasem made their first contribution in https://github.com/ABI-Software/scaffoldmaker/pull/103
* keeran97 made their first contribution in https://github.com/ABI-Software/scaffoldmaker/pull/153
* hsorby made their first contribution in https://github.com/ABI-Software/scaffoldmaker/pull/165
**Full Changelog**: https://github.com/ABI-Software/scaffoldmaker/commits/v0.2.0