Sccellfie

**Full Changelog**: https://github.com/earmingol/scCellFie/compare/v0.2.1...v0.2.2

- [Added code to fix gene names when they have alternative names.](https://github.com/earmingol/scCellFie/commit/faf1595f9842b8164fc9ce437607c1d2bd3c1d9c)

**Full Changelog**: https://github.com/earmingol/scCellFie/compare/v0.1.14...v0.2.0

Updates
- [Added thresholds to keep reactions and tasks based on the genes in AnnData and the reactions kept for each task](https://github.com/earmingol/scCellFie/commit/2f6576616e22f1181bf8eb8d183936e822fb5b31)

**Full Changelog**: https://github.com/earmingol/scCellFie/compare/v0.1.13...v0.1.14

New features & updates
- [Added new aggregation using mean among top X% values - X defined with top_percent](https://github.com/earmingol/scCellFie/commit/2884af7b7675daa432309e8d24b5e90e44f1ff5e)

- [Updated metabolic data to include info from Human1 GEM.](https://github.com/earmingol/scCellFie/commit/0977ea1492b81e099cffa39b8d76706e66d28d76)

**Full Changelog**: https://github.com/earmingol/scCellFie/compare/v0.1.12...v0.1.13

New features

- Added option to select what connectivities and distances to used based on label. See [sccellfie.expression.smoothing.py](https://github.com/earmingol/scCellFie/blob/main/sccellfie/expression/smoothing.py)

**Full Changelog**: https://github.com/earmingol/scCellFie/compare/v0.1.11...v0.1.12

New features:
- Added the option `use_raw` when running `sccellfie.expression.smooth_expression_knn()`
- Quick fix for smoothing expression with respect to v0.1.11.