Sceptr

First production release! 🥳 Thank you to everyone who has helped with the project.

What's Changed
* Add latest model versions by yutanagano in https://github.com/yutanagano/sceptr/pull/19
* Make docs by yutanagano in https://github.com/yutanagano/sceptr/pull/20
* Improve docs by yutanagano in https://github.com/yutanagano/sceptr/pull/21
* Move functional api to top by yutanagano in https://github.com/yutanagano/sceptr/pull/22
* Add publication figures by yutanagano in https://github.com/yutanagano/sceptr/pull/23
* Prepare for first stable release by yutanagano in https://github.com/yutanagano/sceptr/pull/24


**Full Changelog**: https://github.com/yutanagano/sceptr/compare/v1.0.0-beta.1...v1.0.0

What's Changed
* Rename classic variant to left-aligned by yutanagano in https://github.com/yutanagano/sceptr/pull/11
* Update SCEPTR name acronym from ...Peptide... to ...Primary... by yutanagano in https://github.com/yutanagano/sceptr/pull/12
* Polish documentation by yutanagano in https://github.com/yutanagano/sceptr/pull/13
* Bump libtcrlm dependency to v1.0.0 by yutanagano in https://github.com/yutanagano/sceptr/pull/14
* Polish pyproject TOML by yutanagano in https://github.com/yutanagano/sceptr/pull/15
* Add github workflows by yutanagano in https://github.com/yutanagano/sceptr/pull/16
* Prepare for first beta release by yutanagano in https://github.com/yutanagano/sceptr/pull/17


**Full Changelog**: https://github.com/yutanagano/sceptr/compare/v1.0.0-alpha.4...v1.0.0-beta.1

What's Changed
* Add finetuned model by yutanagano in https://github.com/yutanagano/sceptr/pull/4
* Rename models by yutanagano in https://github.com/yutanagano/sceptr/pull/5
* Add new OLGA variant by yutanagano in https://github.com/yutanagano/sceptr/pull/6
* Add more variants by yutanagano in https://github.com/yutanagano/sceptr/pull/7
* Add unpaired variant by yutanagano in https://github.com/yutanagano/sceptr/pull/8
* Add dropout noise only variant by yutanagano in https://github.com/yutanagano/sceptr/pull/9
* rename variants according to changes in paper draft by yutanagano in https://github.com/yutanagano/sceptr/pull/10


**Full Changelog**: https://github.com/yutanagano/sceptr/compare/v1.0.0-alpha.3...v1.0.0-alpha.4

What's Changed
* ⚠️ BREAKING CHANGE: the `xlarge` variant is no longer tracked and published as it was unnecessarily large, unwieldy, and was no better than its smaller counterparts making it not a very interesting variant
* New variants added (classic variants, they use learnable initial token embeddings and a traditional sinusoidal positional information embedding method)

**Full Changelog**: https://github.com/yutanagano/sceptr/compare/v1.0.0-alpha.2...v1.0.0-alpha.3

What's Changed
* Add new variants by yutanagano in https://github.com/yutanagano/sceptr/pull/2
* Track `libtcrlm` dependency version with explicit git commit hash to mitigate pip version conflict resolution issues


**Full Changelog**: https://github.com/yutanagano/sceptr/compare/v1.0.0-alpha.1...v1.0.0-alpha.2

What's Changed
* Library code is now outsourced to a separate private repository `libtcrlm`. This means installing the newest version of `sceptr` requires access to this second private repo. If you would like access, please notify yutanagano.
* New variants
* single chain models
* larger paired-chain variant
* extra large CDR3-only, MLM-only variant
* BLOSUM embedding variant (the initial embedding to the transformer uses BLOSUM amino acid encodings)

**Full Changelog**: https://github.com/yutanagano/sceptr/commits/v1.0.0-alpha.1