Scib-metrics

Changed

- Move PCR to utils module in favor of PCR comparison {pr}`46`.

Fixed

- Fix memory issue in `KMeansJax` by using `_kmeans_full_run` with `map` instead of `vmap` {pr}`45`.

Changed

- Reimplement silhouette in a memory constant way, pdist using lax scan {pr}`42`.

Added

- Standardize language of docstring {pr}`30`.
- Use K-means++ initialization {pr}`23`.
- Add pc regression and pc comparsion {pr}`16` {pr}`38`.
- Lax'd silhouette {pr}`33`.
- Cookicutter template sync {pr}`35`.

Added

- NMI/ARI metric with Leiden clustering resolution optimization {pr}`24`.
- iLISI/cLISI metrics {pr}`20`.

See the [GitHub releases][https://github.com/yoseflab/scib-metrics/releases] for details.