Scib

What's Changed
* Add documentation for metrics preprocessing by mumichae in https://github.com/theislab/scib/pull/312
* Add test for duplicate columns by mumichae in https://github.com/theislab/scib/pull/311
* add deprecation decorator for asw_batch by mumichae in https://github.com/theislab/scib/pull/354


**Full Changelog**: https://github.com/theislab/scib/compare/v1.0.5...v1.1.0

What's Changed
* Make rpy2 and anndata2ri optional by mumichae in https://github.com/theislab/scib/pull/339
* Fix batch silhouette bug by mumichae in https://github.com/theislab/scib/pull/342
* General optimised clustering function by mumichae in https://github.com/theislab/scib/pull/343
* Only pass max_epochs to SCVI.train if set by scottgigante-immunai in https://github.com/theislab/scib/pull/345
* add harmony by adamgayoso in https://github.com/theislab/scib/pull/317
* Fix kBET import issue by mumichae in https://github.com/theislab/scib/pull/350
* Update louvain to 0.8 by scottgigante-immunai in https://github.com/theislab/scib/pull/346

New Contributors
* scottgigante-immunai made their first contribution in https://github.com/theislab/scib/pull/345

**Full Changelog**: https://github.com/theislab/scib/compare/v1.0.4...v1.0.5

What's Changed
* Update to scvi tools again, also scgen which now uses scvi tools by adamgayoso in https://github.com/theislab/scib/pull/316
* Fix scanvi bug by mumichae in https://github.com/theislab/scib/pull/327
* Fix deprecation warning by mumichae in https://github.com/theislab/scib/pull/326
* Bump rp2y dependency by mumichae in https://github.com/theislab/scib/pull/334


**Full Changelog**: https://github.com/theislab/scib/compare/v1.0.3...v1.0.4

What's Changed
* Add pre-commit by MxMstrmn in https://github.com/theislab/scib/pull/307
* Fix duplicate cols scanorama by MxMstrmn in https://github.com/theislab/scib/pull/306
* Fix scanorama batch reordering by mumichae in https://github.com/theislab/scib/pull/309
* Add option to use leiden by scottgigante in https://github.com/theislab/scib/pull/203
* Avoid filtering in normalization by scottgigante in https://github.com/theislab/scib/pull/208

New Contributors
* MxMstrmn made their first contribution in https://github.com/theislab/scib/pull/307

**Full Changelog**: https://github.com/theislab/scib/compare/v1.0.2...v1.0.3

What's Changed
* Add pre-commit by MxMstrmn in https://github.com/theislab/scib/pull/307
* Fix duplicate cols scanorama by MxMstrmn in https://github.com/theislab/scib/pull/306
* Fix scanorama batch reordering by mumichae in https://github.com/theislab/scib/pull/309
* Add option to use leiden by scottgigante in https://github.com/theislab/scib/pull/203
* Avoid filtering in normalization by scottgigante in https://github.com/theislab/scib/pull/208

New Contributors
* MxMstrmn made their first contribution in https://github.com/theislab/scib/pull/307

**Full Changelog**: https://github.com/theislab/scib/compare/v1.0.2...v1.0.3

What's Changed
* Addressing installation issues by mumichae in https://github.com/theislab/scib/pull/297
* Update highly_variable_genes.py by danielStrobl in https://github.com/theislab/scib/pull/269
* Documentation by mumichae in https://github.com/theislab/scib/pull/279
* Improve LISI multiprocessing specification by mumichae in https://github.com/theislab/scib/pull/301
* Fix LISI warning error by mumichae in https://github.com/theislab/scib/pull/302


**Full Changelog**: https://github.com/theislab/scib/compare/v1.0.1...v1.0.2

What's Changed
* Added embed to opt_louvain in metrics function (277) by lauradmartens in https://github.com/theislab/scib/pull/281
* [WIP] fixed clisi scaling bug by LuckyMD in https://github.com/theislab/scib/pull/287
* Remove `,` in `bool` var by johnarevalo in https://github.com/theislab/scib/pull/295
* Update dependency versions by mumichae in https://github.com/theislab/scib/pull/294

New Contributors
* lauradmartens made their first contribution in https://github.com/theislab/scib/pull/281
* johnarevalo made their first contribution in https://github.com/theislab/scib/pull/295

**Full Changelog**: https://github.com/theislab/scib/compare/v1.0.0...v1.0.1