Scipion-em-relion

Latest version: v5.0.2

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4.0.4

- removed RELION_PYTHON, replaced by conda env variable RELION_ENV_ACTIVATION
- update citations
- fix parsing of pixel size upon import
- fix wrong kwarg name useBaseName which caused ignoring micnames in export protocols
- fix assign optics when some mics are missing (delarosatrevin)

4.0.3

- allowPointers for box size related parameters
- new protocol: import coordinates from a particles star file
- remove :mrc postfix from volume names if possible

4.0.2

4.0.1

- Postprocessing now supports half maps input
- emtable requirement updated
- close 325 by providing some column types to particle Tables

4.0

- Relion 4.0 support:
- download sources from github
- all protocols updated with new args / params
- new 2D class ranker protocol (test still missing)
- new env var RELION_PYTHON for Python with Torch & Numpy modules (required for the protocol above)
- separate initial model protocol for 4.0 (3.x is incompatible)
- float16 option disabled
- EER enabled, needs more testing
- BUGFIX: wrong shifts were saved in motioncor when skipping frames
- rlnMicrographStartFrame is saved in optics for mc output movies
- Multi-body protocol improvements, viewer added
- Postprocessing now supports multi-body input

3.1.3

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