Scipion-em-sphire

- add cryolo 1.9.6 and napari-boxmanager 0.4.4
- convert tomograms to mrc for napari_boxmanager viewer
- napari viewer runs in the project Tmp folder
- Prevent viewers from locking the screen focus
- reading .coords files from napari-boxmanager
- checking all coordinates files to generate new outputs

3.1.8: Fix: coordinates 3d sent to napari are not flipped on Y axis.

- Creating a manual picking protocol using napari-boxmanager
- Creating a tomogram training protocol
- Adding the filaments options to cryolo tomogram picking protocol