Scipion-em-tomo

- New protocol: "Landmarks to 2D coordinates". To jump to SPA from 3d info.
- Tolerate empty lines in tlt files
- Motion correction outputs renamed and fixed for odd/even and dose weighted
- Tilt series can be sent to Xmipp metadata viewer for subsetting/inspection
- TomoMetadataViewer shows the preview of the slice and some metadata (tiltAxisAngle)
- Fix: Imod not needed for importing coordinates, unless imod mode is selected
- Compose tilt series: Added "exclusion words" to filter out mdocs

Developers:
- angleAxis1 and angleAxis2 removed from the TomoAcquisition class

- Reconstruction template fixed.
- Relion 4 /dynamo template tweaked. Specifically dynamo alignment
- HIV template tweaked: one 3d classification removed. Mapback uses the 3d class.
- OddEven functionality reviewed: Tilt Series set and Tomograms set have oddeven attributes/flags and
there is no need for separate sets anymore. odd and even are internally referenced.
- Added a new ctf tomo viewer (CtfConsensusTomoViewer)
- ComposeTS: allowNull control added, removed validation and added _possibleOutputs

Developers:
- SubTomogram.getVolName() uses Coordinate3D.getTomoId()

- SetOfSubtomoClasses improved: sampling rate set, coordinates injected

- Templates tweaked: title and some mpi values

Developers:
- SetOfCoordinates and SetOfTiltSeries have a getTSIds method to return TS is contained (+ test)

- Tilt order inferred from dose when tlt file has dose
- Fix: subtomograms with coordinates work in absence of volId
- HIV-HTA template: removes coords extraction and reconstruction since mapback can be done without them
- Import Tilt series or Import tilt series movies do not work in streaming anymore
- Import tomograms outputs "Tomograms" and defines possible outputs. Templates and tests adapted
- Pyseg workflow template fixed (extra graphs removed)
- HIV Reconstruction workflow template fixed (tomograms origin taken from mrc)
- Protocols "fit vesicles" brought here from xmipptomo. Test added with filter by normals.
Developers:
- __init__ uses logger now
- test_transformation fixed
- SetOfCoordinates refactored internally to deal better with tomograms.
- SetOfSubtomograms.iterCoordinates --> Mimics SetOfCoordinates behavior

developers: hot fix, invalid import in test centralized layer