Scsplit

new function (beta) to allow demultiplexing unknown number of samples
pickle dump of whole final model removed
output format change for scSplit_dist_matrix.csv and scSplit_PA_matrix.csv
output format change for scSplit_result.csv: “DBL” -> “DBL-”

added common SNVs filtering as part of the scSplit count function with -c/--com parameter
all cell assignments put in one file
doublet expectation added to allow user to increase doublets based on expectation

re-package the scripts into:

scSplit count (previous matrices.py)
scSplit run (previous main.py)
scSplit genotype (previous genotype.py)

Bug fixings - "ValueError: setting an array element with a sequence" when generating distinguishing variants
New function - output the whole Presence/Absence Matrix for alternative alleles for all variants

enabled user-specified doublet proportion
bugs fixed

- doublet detection improved
- LL calculation improved