Seqnado

Latest version: v0.5.4

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0.1.5

What's Changed
* fix(CI): Corrects releases. by alsmith151 in https://github.com/alsmith151/SeqNado/pull/59

**Full Changelog**: https://github.com/alsmith151/SeqNado/compare/v0.1.4...v0.1.5

0.1.4

What's Changed
* Changed container for new seqnado_pipline and _report by alsmith151 in https://github.com/alsmith151/SeqNado/pull/53
* Fix cookiecutter template by CChahrour in https://github.com/alsmith151/SeqNado/pull/54
* Feat make tasks optional by CChahrour in https://github.com/alsmith151/SeqNado/pull/55
* Fix config by CChahrour in https://github.com/alsmith151/SeqNado/pull/57
* Develop by CChahrour in https://github.com/alsmith151/SeqNado/pull/58


**Full Changelog**: https://github.com/alsmith151/SeqNado/compare/v0.1.3...v0.1.4

0.1

What's Changed
* Re-develop and rename by alsmith151 in https://github.com/alsmith151/SeqNado/pull/2
* Fix hub creation bugs by alsmith151 in https://github.com/alsmith151/SeqNado/pull/3
* Fix bigWig and hub generation by alsmith151 in https://github.com/alsmith151/SeqNado/pull/4
* Enable merging of hubs between runs. by alsmith151 in https://github.com/alsmith151/SeqNado/pull/5
* Changed alignment stats method to samtools stats. by alsmith151 in https://github.com/alsmith151/SeqNado/pull/6
* Fix peak calling by alsmith151 in https://github.com/alsmith151/SeqNado/pull/7
* Bug fixes by alsmith151 in https://github.com/alsmith151/SeqNado/pull/8
* Enable bigwig generation and peak calling using Homer by alsmith151 in https://github.com/alsmith151/SeqNado/pull/9
* Major pipeline updates by alsmith151 in https://github.com/alsmith151/SeqNado/pull/10
* Fix RNA pipeline by alsmith151 in https://github.com/alsmith151/SeqNado/pull/11
* Fix hub colors by alsmith151 in https://github.com/alsmith151/SeqNado/pull/12
* Removed intermediate unsorted bam file in RNA-seq pipeline by alsmith151 in https://github.com/alsmith151/SeqNado/pull/13
* Corrected bug in hub when combining homer and MACS peak calls by alsmith151 in https://github.com/alsmith151/SeqNado/pull/14
* Updated documentation and adding example configs by JoeHarman in https://github.com/alsmith151/SeqNado/pull/18
* Fixed incorrect blacklist parameter in RNA pipeline by alsmith151 in https://github.com/alsmith151/SeqNado/pull/20
* feat(pipeline): Add lanceotron peak calling method by alsmith151 in https://github.com/alsmith151/SeqNado/pull/19
* Fix for STAR --readFilesIn parameter paired end by JoeHarman in https://github.com/alsmith151/SeqNado/pull/23
* fix(pipeline): Fix slurm oversubscription by alsmith151 in https://github.com/alsmith151/SeqNado/pull/24
* BREAKING CHANGE: Replace cgat-core with snakemake by alsmith151 in https://github.com/alsmith151/SeqNado/pull/25
* feat(pipeline): Pipeline now follows snakemake conventions by alsmith151 in https://github.com/alsmith151/SeqNado/pull/26
* chore: Fix github workflow by alsmith151 in https://github.com/alsmith151/SeqNado/pull/27
* chore(packaging): Chore rearrange package by alsmith151 in https://github.com/alsmith151/SeqNado/pull/31
* feat: add config using cookiecutter by CChahrour in https://github.com/alsmith151/SeqNado/pull/33
* feat: Overhaul of pipeline to add new features and stability by alsmith151 in https://github.com/alsmith151/SeqNado/pull/44
* feat(package): Remove unwanted files and directories by alsmith151 in https://github.com/alsmith151/SeqNado/pull/45
* fix(pipeline): Now correctly ignores missing blacklist parameter by alsmith151 in https://github.com/alsmith151/SeqNado/pull/47
* fix(tests): Ensures all tests are running correctly for the current version of the package by alsmith151 in https://github.com/alsmith151/SeqNado/pull/48
* Update README.md by alsmith151 in https://github.com/alsmith151/SeqNado/pull/46
* fix(packaging): Fix missing cookiecutter repo for seqnado config by alsmith151 in https://github.com/alsmith151/SeqNado/pull/49
* Fix package install by alsmith151 in https://github.com/alsmith151/SeqNado/pull/50

New Contributors
* JoeHarman made their first contribution in https://github.com/alsmith151/SeqNado/pull/18
* CChahrour made their first contribution in https://github.com/alsmith151/SeqNado/pull/33

**Full Changelog**: https://github.com/alsmith151/SeqNado/commits/v0.1

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