What's Changed * Fixes --from-project with click, removes useless fctions, fix sequana version by cokelaer in https://github.com/sequana/sequana_pipetools/pull/92
What's Changed * Implement click for all standalones and pipelines by cokelaer in https://github.com/sequana/sequana_pipetools/pull/78 * Major update related to click by cokelaer in https://github.com/sequana/sequana_pipetools/pull/82 * * All Options classes have now an equivalent using click. We kept the argparse-related options for back-compatibility for now * --run-mode removed and replaced by --profile options. Profiles are used and stored withub .sequana/profiles * Remove --slurm-cores-per-job redundant with resources from snakemake * cluster_config are now deprecated in favor of profile * sequana_slurm_status removed. Use manager.error_report in pipelines instead