Simpleitk

Announcement

We are pleased to announce the release of SimpleITK 0.10.0!

As with all SimpleITK releases, we have a variety of binaries available. This includes fresh Python Wheels for MS Windows, GNU Linux and Apple OS X, along with Java and CSharp binaries for MS Windows. Additionally, binaries for the Python distribution Anaconda are available.

This release features major improvements to the build infrastructure, improved support for R, better downloads with pip and many new features!

Information on how to get started and download the binaries: https://www.itk.org/Wiki/SimpleITK/GettingStarted#Binaries

Binary distributions for many platforms and languages are available for downloading: https://sourceforge.net/projects/simpleitk/files/SimpleITK/0.10.0/

Release Doxygen Documentation: https://www.itk.org/SimpleITKDoxygen010/html/index.html

Key Improvements
- The R language bindings have received extensive improvements and bug fixes.
- Added Image::SetMetaData method
- Added LandmarkBasedTransformInitializer
- Added MultiLableSTAPLEImageFilter
- Show now prefers Fiji over the basic ImageJ
- Refactored Wrapping directory into separate languages (paths have changed!)
- Separated Lua, GTest, and virtualenv into SuperBuild dependencies
- Added SITK_FORBID_DOWNLOADS option
- Enabled each language wrapping to be an independent project dependent on the SimpleITK C++ interface and libraries.
- Many CMake build improvements to default configurations such as visibility, and link library interfaces
- Support for gcc 6.1 and compatibility with c++14
- CMake version 3.3 is now required

Python
- Update your pip version!
- Added manylinux1 wheels (PEP 513)
- SimpleITK_PYTHON_THREADS enabled by default to better support multi-threading in Python
- No egg binary distributions, wheels fully support the standard platforms
- Python 2.7 is no longer packaged for 64-bit windows
- Avoid linking against libpython.so to improve compatibility and portability

Lua
- Lua languages bindings now compile as a loadable module
- Created Lua rockspec builder (https://github.com/SimpleITK/SimpleITKLuaRock)
- Can be used in Lua Torch

R
- Fix issues with the bracket operator preserving physical location
- Created script to generate R man pages
- Disabled return Self value from functions
- Create simplified R Installer (https://github.com/SimpleITK/SimpleITKRInstaller)

Announcement

We are pleased to announce the release of SimpleITK 0.9.1!

As with all SimpleITK releases, we have a variety of binaries available. This includes fresh Python Wheels and Eggs, along with Java, and CSharp binaries. Additionally, new binaries for Anaconda have been made improving the dependency requirements.

This is a patch release and includes an update to the ITK version from 4.7.2+ to 4.8.1. Additional updates include: improved formatting for python documentation, fixes to the transform interfaces, improved ImageIO exceptions and build improvements.

Information on how to get started and download the binaries: http://www.itk.org/Wiki/SimpleITK/GettingStarted#Binaries

Binary distributions for many platforms and languages are available for downloading: https://sourceforge.net/projects/simpleitk/files/SimpleITK/0.9.1/

Release Doxygen Documentation: http://www.itk.org/SimpleITKDoxygen09/html/index.html

Commits

<!-- language: lang-none -->


* db0ce5d Updating SimpleITK to 0.9.1 version for release
*   aa2c3ff Merge branch 'UpdateITKTo4.8.1' into release
|\
| * fee435f Update ITK superbuild to 4.8.1 release
* |   6c3b4f0 Merge branch 'AddMissingJavaCMakeVariables' into release
|\ \
| * | cec0b39 Add missing Java variables to the language options files
|/ /
* |   1c5f9b4 Merge branch 'UpdateITKTo4.8.1' into release
|\ \
| |/
| * c027978 Updating ITK superbuild towards v4.8.1 pending release
|/
* aa33380 Do not pass unneeded language arguments on the command line
* 7b83998 Require libraries when a wrapping for a language is enabled
* 5b1c3b5 Regenerated the .i files
* 0399fb6 Updated space_parse with a noLeadingSpace flag
* 792c306 Fix leading space problem in doxy2swig.py
* 8754ca5 Add unsigned int specifier
* 92fee75 Adding ObjectCount measurement to ConnectedComponents filter
* 1ac4872 WIP: Adding local transform fixes
*   a389ca0 Merge branch 'SIMPLEITK-638_ImproveImageReadException' into release
|\
| * a55f6b0 Improve exception when unable to create ImageIO
* 706b697 Merge branch 'SIMPLEITK-639_PatchRevisionDescription' into release
* fd06d0b Replace tabs with spaces.
* 13c0d41 GetGitRevisionDescription: Fix issue referencing project source

Announcement

We are pleased to announce the release of SimpleITK 0.9!

NOW WITH REGISTRATION

Here is a quick overview of the ITKv4's registration in SimpleITK via IPython/Jupiter notebook: http://insightsoftwareconsortium.github.io/SimpleITK-Notebooks/60_RegistrationIntroduction.html

This release features the [ImageRegistrationMethod](http://www.itk.org/SimpleITKDoxygen/html/classitk_1_1simple_1_1ImageRegistrationMethod.html) which brings a SimpleITK style interface to the modular ITKv4 registration framework. This adds support for a variety of transforms including rigid, affine, b-spline, and deformation fields. The metrics supported include correlation, means squares, ANTS neighborhood correlation, and mutual information. A variety of optimizers are available along with scales estimators for the optimized transformation parameters and built in multi-scale registration support.

Additionally, a number of registration filters have been added: DemonsRegistrationFilter, DiffeomorphicDemonsRegistrationFilter, FastSymmetricForcesDemonsRegistrationFilter, LevelSetMotionRegistrationFilter and SymmetricForcesDemonsRegistrationFilter.

Several examples can be found in the examples directory to help you get started. These examples include Affine registration, BSpline, Demons and Displacement fields. http://www.itk.org/SimpleITKDoxygen/html/examples.html

We have also added the following filters: AdditiveGaussianNoiseImageFilter, AggregateLabelMapFilter, BinaryImageToLabelMapFilter, ChangeLabelLabelMapFilter, CollidingFrontsImageFilter, DisplacementFieldJacobianDeterminantFilter, FastMarchingBaseImageFilter, FastMarchingUpwindGradientImageFilter, InverseDisplacementFieldImageFilter, InvertDisplacementFieldImageFilter, LabelImageToLabelMapFilter, LabelShapeStatisticsImageFilter, LabelStatisticsImageFilter, LabelUniqueLabelMapFilter, MergeLabelMapFilter, RelabelLabelMapFilter, SaltAndPepperNoiseImageFilter, ShotNoiseImageFilter, SpeckleNoiseImageFilter and TransformToDisplacementFieldFilter

Information on how to get started and download the binaries: http://www.itk.org/Wiki/SimpleITK/GettingStarted#Binaries

Binary distributions for many platforms and languages are available for downloading: https://sourceforge.net/projects/simpleitk/files/SimpleITK/0.9rc1/

Release Doxygen Documentation: http://www.itk.org/SimpleITKDoxygen09/html/index.html

Additional Release Notes: http://www.itk.org/Wiki/SimpleITK/ReleaseNotes#SimpleITK_-_Version_0.9.0_Release

Sub-task
- [SIMPLEITK-426](https://issues.itk.org/jira/browse/SIMPLEITK-426) - Wrap Image registration filters
- [SIMPLEITK-521](https://issues.itk.org/jira/browse/SIMPLEITK-521) - Add initial RegistrationMethod class with basic components
- [SIMPLEITK-522](https://issues.itk.org/jira/browse/SIMPLEITK-522) - Add support for active optimizing transform.
- [SIMPLEITK-536](https://issues.itk.org/jira/browse/SIMPLEITK-536) - Create Infrastructure to support testing registration
- [SIMPLEITK-537](https://issues.itk.org/jira/browse/SIMPLEITK-537) - Add support for Displacement fields
- [SIMPLEITK-538](https://issues.itk.org/jira/browse/SIMPLEITK-538) - Add support for B-Splines Transforms
- [SIMPLEITK-549](https://issues.itk.org/jira/browse/SIMPLEITK-549) - Add initial Implementation of ImageRegistrationMethodv4
- [SIMPLEITK-558](https://issues.itk.org/jira/browse/SIMPLEITK-558) - Add support for fixed and moving image masks.
- [SIMPLEITK-560](https://issues.itk.org/jira/browse/SIMPLEITK-560) - Comprehensive coverage testing of the registration framework is needed.
- [SIMPLEITK-561](https://issues.itk.org/jira/browse/SIMPLEITK-561) - Handle copy on write for the InitialTransform input to the ImageRegistrationMethod
- [SIMPLEITK-562](https://issues.itk.org/jira/browse/SIMPLEITK-562) - Write documentation for the transform and registration method classes.
- [SIMPLEITK-563](https://issues.itk.org/jira/browse/SIMPLEITK-563) - Wrap CenteredVersorTransformInitaizalizer
- [SIMPLEITK-564](https://issues.itk.org/jira/browse/SIMPLEITK-564) - Refactor ImageRegistrationMethodv4 ivar for components
- [SIMPLEITK-574](https://issues.itk.org/jira/browse/SIMPLEITK-574) - Add ImageRegistrationMethodv4 methods to set all transforms
- [SIMPLEITK-575](https://issues.itk.org/jira/browse/SIMPLEITK-575) - Add access to the estimated optimizer scales
- [SIMPLEITK-595](https://issues.itk.org/jira/browse/SIMPLEITK-595) - Add DisplacementField specific interface
- [SIMPLEITK-608](https://issues.itk.org/jira/browse/SIMPLEITK-608) - Add Evaluate metod to the ImageRegistrationMethod
- [SIMPLEITK-609](https://issues.itk.org/jira/browse/SIMPLEITK-609) - Remove Transform's polymorphism cast/conversion

Bug
- [SIMPLEITK-393](https://issues.itk.org/jira/browse/SIMPLEITK-393) - Does not write correct type for Int8
- [SIMPLEITK-525](https://issues.itk.org/jira/browse/SIMPLEITK-525) - Enable deletion of command while an filter exists.
- [SIMPLEITK-526](https://issues.itk.org/jira/browse/SIMPLEITK-526) - Fix CreateInterpolator guarder define miss match
- [SIMPLEITK-565](https://issues.itk.org/jira/browse/SIMPLEITK-565) - The filters with multiple named inputs are not being checked if the image's type and dimension match.
- [SIMPLEITK-582](https://issues.itk.org/jira/browse/SIMPLEITK-582) - Unable to load certain DICOM series by seriesID
- [SIMPLEITK-590](https://issues.itk.org/jira/browse/SIMPLEITK-590) - Fix PNG sCal issue in master
- [SIMPLEITK-598](https://issues.itk.org/jira/browse/SIMPLEITK-598) - CMake BUILD_EXAMPLES SuperBuild flag not propogated correctly
- [SIMPLEITK-616](https://issues.itk.org/jira/browse/SIMPLEITK-616) - Using the ImageSeriesWriter with VectorImages does not work.
- [SIMPLEITK-617](https://issues.itk.org/jira/browse/SIMPLEITK-617) - Check if the LBFGSB optimizer respects the number of iteration parameters. This may be an ITK bug.
- [SIMPLEITK-622](https://issues.itk.org/jira/browse/SIMPLEITK-622) - LevelSetMotionRegistrationFilter documentation
- [SIMPLEITK-624](https://issues.itk.org/jira/browse/SIMPLEITK-624) - Linking is running out of memory on windows with the monolithic build for distrubutions
- [SIMPLEITK-626](https://issues.itk.org/jira/browse/SIMPLEITK-626) - When printing transform the reported ITK reference count is 2.
- [SIMPLEITK-629](https://issues.itk.org/jira/browse/SIMPLEITK-629) - VS11 has compilation error with std::bind
- [SIMPLEITK-632](https://issues.itk.org/jira/browse/SIMPLEITK-632) - Intermettent build failure of SimpleITK
- [SIMPLEITK-633](https://issues.itk.org/jira/browse/SIMPLEITK-633) - invoking execute method without setting initial transform segfaults

Epic
- [SIMPLEITK-1](https://issues.itk.org/jira/browse/SIMPLEITK-1) - Develop registration framework for ITKv4 Framework
- [SIMPLEITK-571](https://issues.itk.org/jira/browse/SIMPLEITK-571) - Add More Registration Examples

Improvement
- [SIMPLEITK-378](https://issues.itk.org/jira/browse/SIMPLEITK-378) - The Readme.md file is not particularly user friendly for Windows

users. Could it be renamed for the C package to say "Readme.txt"?
- [SIMPLEITK-490](https://issues.itk.org/jira/browse/SIMPLEITK-490) - Update Measurements to be tr1::function calls to the base ITK object.
- [SIMPLEITK-512](https://issues.itk.org/jira/browse/SIMPLEITK-512) - Add basic LabelMap Filters for manipulating labels.
- [SIMPLEITK-586](https://issues.itk.org/jira/browse/SIMPLEITK-586) - Enforcing System ITK Module dependencies
- [SIMPLEITK-596](https://issues.itk.org/jira/browse/SIMPLEITK-596) - Update SimpleITK Doxygen doxygen.config
- [SIMPLEITK-611](https://issues.itk.org/jira/browse/SIMPLEITK-611) - request for transform constructors

New Feature
- [SIMPLEITK-298](https://issues.itk.org/jira/browse/SIMPLEITK-298) - MergeLabelMapFilter
- [SIMPLEITK-345](https://issues.itk.org/jira/browse/SIMPLEITK-345) - The Image readers should have a cast or read as option
- [SIMPLEITK-429](https://issues.itk.org/jira/browse/SIMPLEITK-429) - Some filter have optional inputs. This include PDE registration and masked thresholding. The needs to be added to the JSON.
- [SIMPLEITK-533](https://issues.itk.org/jira/browse/SIMPLEITK-533) - Develop the Interface for the ImageRegistrationMethodv4 based on the ITKv4 registration framework.
- [SIMPLEITK-541](https://issues.itk.org/jira/browse/SIMPLEITK-541) - The Demons registration based filters need an optional input for the initial deformation field.
- [SIMPLEITK-542](https://issues.itk.org/jira/browse/SIMPLEITK-542) - Add the filter from the ImageNoise module
- [SIMPLEITK-543](https://issues.itk.org/jira/browse/SIMPLEITK-543) - Update ITK towards version 4.6
- [SIMPLEITK-550](https://issues.itk.org/jira/browse/SIMPLEITK-550) - Add TransfromToDisplacementField filter.
- [SIMPLEITK-555](https://issues.itk.org/jira/browse/SIMPLEITK-555) - Refactor Transforms to allow specific interface for different transformation types
- [SIMPLEITK-567](https://issues.itk.org/jira/browse/SIMPLEITK-567) - Add wrapping for the ScaleSkewVersor
- [SIMPLEITK-573](https://issues.itk.org/jira/browse/SIMPLEITK-573) - Add missing methods to the transform interfaces
- [SIMPLEITK-588](https://issues.itk.org/jira/browse/SIMPLEITK-588) - Add access to the GlobalPhysicalSpaceTolerance variable.
- [SIMPLEITK-603](https://issues.itk.org/jira/browse/SIMPLEITK-603) - Add transform adaptor support for the ImageRegistration method
- [SIMPLEITK-605](https://issues.itk.org/jira/browse/SIMPLEITK-605) - Add ScaleTransform
- [SIMPLEITK-607](https://issues.itk.org/jira/browse/SIMPLEITK-607) - Missing methods to the ImageRegistrationMethod class
- [SIMPLEITK-612](https://issues.itk.org/jira/browse/SIMPLEITK-612) - For Image and Transform class make public and rename MakeUniqueForWrite to MakeUnique
- [SIMPLEITK-613](https://issues.itk.org/jira/browse/SIMPLEITK-613) - Add FastMarchingUpwindGradient and CollidingFronts filters
- [SIMPLEITK-623](https://issues.itk.org/jira/browse/SIMPLEITK-623) - Add optimizer weights to image registration method

Task
- [SIMPLEITK-438](https://issues.itk.org/jira/browse/SIMPLEITK-438) - add method to use a VectorImage as a Image of Vectors for displacement fields.
- [SIMPLEITK-530](https://issues.itk.org/jira/browse/SIMPLEITK-530) - Test and validate useful and correct functionality of the components in the ImageRegistrationMethods
- [SIMPLEITK-531](https://issues.itk.org/jira/browse/SIMPLEITK-531) - Use SimpleITK's Registration to perform a complete neuro-imaging registration sequence.
- [SIMPLEITK-544](https://issues.itk.org/jira/browse/SIMPLEITK-544) - Update SWIG to 3.0.2
- [SIMPLEITK-545](https://issues.itk.org/jira/browse/SIMPLEITK-545) - Upgrade PCRE to latest version.
- [SIMPLEITK-591](https://issues.itk.org/jira/browse/SIMPLEITK-591) - run script that propagates doxygen documentation to python docstring
- [SIMPLEITK-599](https://issues.itk.org/jira/browse/SIMPLEITK-599) - Update SWIG to 3.0.4 and PCRE to 8.36
- [SIMPLEITK-610](https://issues.itk.org/jira/browse/SIMPLEITK-610) - Fix Dashboard warnings and failing tests.
- [SIMPLEITK-614](https://issues.itk.org/jira/browse/SIMPLEITK-614) - Address CMake CMP0054 policy warnings.
- [SIMPLEITK-618](https://issues.itk.org/jira/browse/SIMPLEITK-618) - Update ITK super build version to 4.7.1
- [SIMPLEITK-619](https://issues.itk.org/jira/browse/SIMPLEITK-619) - Update SWIG doc strings.
- [SIMPLEITK-630](https://issues.itk.org/jira/browse/SIMPLEITK-630) - Reduce dashboard warnings.
- [SIMPLEITK-634](https://issues.itk.org/jira/browse/SIMPLEITK-634) - Update ITK super build toward 4.7.2
- [SIMPLEITK-636](https://issues.itk.org/jira/browse/SIMPLEITK-636) - Update SimpleITK Doxygen documentation form ITK and update the SWIG documentation.
- [SIMPLEITK-637](https://issues.itk.org/jira/browse/SIMPLEITK-637) - Why are there no symbols in the Doxygen?

Announcement

We are pleased to announce the SimpleITK 0.8.1 Release.

SimpleITK is a simplified layer built on top of ITK, intended to facilitate its use in rapid prototyping, education and interpreted languages. SimpleITK provides binaries for several wrapped languages to enable users to rapidly get started using ITK.

Information on how to get started and download the binaries: http://www.itk.org/Wiki/SimpleITK/GettingStarted#Binaries

This patch release updates the ITK version to the newly released 4.7.0. Additionally, this patch contains improved support for CMake 3.0, fixes for compilation issues, the addition of the LabelOverlapMeasures filter, and a fix for the ClampCast filter.

Also, we are now compiling for Python 3.4, and have stopped compiling for Python 3.2. Lastly, we are providing some binaries for the Anaconda Python distribution on Binstar.

Binary distributions for many platforms and languages are available for downloading: https://sourceforge.net/projects/simpleitk/files/SimpleITK/0.8.1/

Release Doxygen Documentation: http://www.itk.org/SimpleITKDoxygen08/html/index.html

Sub-task
- [SIMPLEITK-583](https://issues.itk.org/jira/browse/SIMPLEITK-583) - Don't always use ez_setup which downloads setup tools

Bug
- [SIMPLEITK-513](https://issues.itk.org/jira/browse/SIMPLEITK-513) - The R package has version 0.5-1 for SimpleITK
- [SIMPLEITK-514](https://issues.itk.org/jira/browse/SIMPLEITK-514) - Off by one error in CMake code for splitting the basic filters library, can result in missing link dependencies.
- [SIMPLEITK-517](https://issues.itk.org/jira/browse/SIMPLEITK-517) - Associate installation of all headers with "Development" component
- [SIMPLEITK-518](https://issues.itk.org/jira/browse/SIMPLEITK-518) - Version variable not set after "find_package(SimpleITK)
- [SIMPLEITK-526](https://issues.itk.org/jira/browse/SIMPLEITK-526) - Fix CreateInterpolator guarder define miss match
- [SIMPLEITK-529](https://issues.itk.org/jira/browse/SIMPLEITK-529) - Minor Help Documentation bug
- [SIMPLEITK-546](https://issues.itk.org/jira/browse/SIMPLEITK-546) - SimpleITK Java bindings fail to compile
- [SIMPLEITK-551](https://issues.itk.org/jira/browse/SIMPLEITK-551) - Clamp cast filter is not setting correct bounds.
- [SIMPLEITK-552](https://issues.itk.org/jira/browse/SIMPLEITK-552) - CMake 3.0 warning - Do not use LOCATION property in Wrapping/CMakeLists.txt
- [SIMPLEITK-553](https://issues.itk.org/jira/browse/SIMPLEITK-553) - CMake 3.0 warning - sitkConfigureFileBuildtime - non-existent target in get_target_property
- [SIMPLEITK-554](https://issues.itk.org/jira/browse/SIMPLEITK-554) - CMake 3.0 Waring - TARGET SimpleITKBasicFilters does not exist
- [SIMPLEITK-568](https://issues.itk.org/jira/browse/SIMPLEITK-568) - In Doxygen coming from ITK, there are missing spaces before and after some reference links
- [SIMPLEITK-581](https://issues.itk.org/jira/browse/SIMPLEITK-581) - For the Superbuild have a way so specify the paths which are searched for system libraries.
- [SIMPLEITK-584](https://issues.itk.org/jira/browse/SIMPLEITK-584) - Address compilation warning on the CDash package release section.
- [SIMPLEITK-589](https://issues.itk.org/jira/browse/SIMPLEITK-589) - Update png test images with an sCal of METER.

Improvement
- [SIMPLEITK-489](https://issues.itk.org/jira/browse/SIMPLEITK-489) - Wrap the LabelOverlapMeasures filter
- [SIMPLEITK-510](https://issues.itk.org/jira/browse/SIMPLEITK-510) - LabelStatisticsImageFilter needs the option to turn off using histograms.
- [SIMPLEITK-577](https://issues.itk.org/jira/browse/SIMPLEITK-577) - On Windows add support to build SimpleITK shared but use release Python libraries.
- [SIMPLEITK-585](https://issues.itk.org/jira/browse/SIMPLEITK-585) - Upgrade ITK Superbuild version to 4.7
- [SIMPLEITK-569](https://issues.itk.org/jira/browse/SIMPLEITK-569) - Upgrade 0.8 to use ITK 4.6

Task
- [SIMPLEITK-503](https://issues.itk.org/jira/browse/SIMPLEITK-503) - Update a the visual guide for building on Linux, change to debian, and update packages needed.
- [SIMPLEITK-511](https://issues.itk.org/jira/browse/SIMPLEITK-511) - Update to ITK 4.5.2
- [SIMPLEITK-523](https://issues.itk.org/jira/browse/SIMPLEITK-523) - Update the SWIG .i documentation files for the new LabelOverlap filter.
- [SIMPLEITK-578](https://issues.itk.org/jira/browse/SIMPLEITK-578) - Update To ITK 4.6.1
- [SIMPLEITK-587](https://issues.itk.org/jira/browse/SIMPLEITK-587) - Update JSON Doxygen strings with latest from ITK 4.7

Announcement

We are happy to announce the SimpleITK 0.8.0 Release.

SimpleITK is a simplified layer built on top of ITK, intended to facilitate its use in rapid prototyping, education and interpreted languages. SimpleITK provide binaries for several wrapped languages to enable users to rapidly get started using ITK.

Information on how to get started and download the binaries: http://www.itk.org/Wiki/SimpleITK/GettingStarted#Binaries

Improvements:
- Support for events and command call-backs. More information can be found here: http://www.itk.org/SimpleITKDoxygen/html/CommandPage.html
- Includes lambdas for Python, and derived delegate classes for CSharp, Java, Ruby and Python.
- Support for compiling OSX Mavericks, by enabling C+11 automatically.
- Improved support for C++11
- Improved support for setting dimensional vector parameters as scalars in the OOP interface
- Improved ProcessObject base class features in OOP interface
- Swig 2.0.12
- Wrapping for R will automatically be enabled if detected due to increased stability with SWIG update.
- Improved printing of enum types.
- Automatically enabling >4GB image on windows.
- Newly wrapped filters BinShrinkImageFilter, CyclicShiftImageFilter, DiscreteGaussianDerivativeImageFilter, LabelVotingImageFilter, and WarpImageFilter.
- Threshold measurement available in automatic thresholding filters
- Experimental Support for generating Python wheels
- ITK 4.5.1

Compatibility:
- The operator "~" was incorrectly implemented as a logical not. This has been corrected to be a bitwise not operator for images.
- The KernelEnum types as an object member has been deprecated.
- In-favor of namespace enum: http://www.itk.org/SimpleITKDoxygen/html/namespaceitk_1_1simple.html#a38998f2c7b469b1ad8e337a0c6c0697b

Updated Documentation:
- http://www.itk.org/Wiki/SimpleITK/GettingStarted/Visual_guide_to_building_on_Linux
- http://www.itk.org/Wiki/SimpleITK/GettingStarted/A_visual_guide_to_SimpleITK_with_CSharp
- http://simpleitk.github.io/SimpleITK-Notebooks/41_Progress.html

Binary distribution for many platforms and languages are available for downloading: https://sourceforge.net/projects/simpleitk/files/SimpleITK/0.8.0/

Release Doxygen Documentation: http://www.itk.org/SimpleITKDoxygen08/html/index.html

Sub-task
- [SIMPLEITK-391](https://issues.itk.org/jira/browse/SIMPLEITK-391) - Correct overloaded operator to use Bitwise filter for bitwise operators
- [SIMPLEITK-476](https://issues.itk.org/jira/browse/SIMPLEITK-476) - Check if the custom std_vector.i file for R is still needed
- [SIMPLEITK-477](https://issues.itk.org/jira/browse/SIMPLEITK-477) - Latest R installs require a NAMESPACE file

Bug
- [SIMPLEITK-445](https://issues.itk.org/jira/browse/SIMPLEITK-445) - `GLIBC_2.14' not found
- [SIMPLEITK-451](https://issues.itk.org/jira/browse/SIMPLEITK-451) - The C++ Examples are not being tested.
- [SIMPLEITK-453](https://issues.itk.org/jira/browse/SIMPLEITK-453) - CLang 5.0 OS X 10.9 std::tr1 namespace doesn't exist
- [SIMPLEITK-478](https://issues.itk.org/jira/browse/SIMPLEITK-478) - Test Java Command Delegate
- [SIMPLEITK-480](https://issues.itk.org/jira/browse/SIMPLEITK-480) - Automatically add -std=c++11 flag for clang 5.0 on mavericks.
- [SIMPLEITK-482](https://issues.itk.org/jira/browse/SIMPLEITK-482) - Fix CMake configuration warning about linking to ourselves.
- [SIMPLEITK-495](https://issues.itk.org/jira/browse/SIMPLEITK-495) - Update virtualenv version, not compatible with Ubuntu 13.10, or Debian testing
- [SIMPLEITK-496](https://issues.itk.org/jira/browse/SIMPLEITK-496) - On Maverick with c++11 SWIG is failing with Java and std::vector<bool>
- [SIMPLEITK-507](https://issues.itk.org/jira/browse/SIMPLEITK-507) - The Examples in the "Segmentation" sub-directory are not being run and need to be updated.
- [SIMPLEITK-508](https://issues.itk.org/jira/browse/SIMPLEITK-508) - The Python PEP386 version should not have a '.' before the release candidate suffix.

Improvement
- [SIMPLEITK-430](https://issues.itk.org/jira/browse/SIMPLEITK-430) - The InterpolatorEnums are print as integers, this should be strings.
- [SIMPLEITK-431](https://issues.itk.org/jira/browse/SIMPLEITK-431) - The enums for morphology filters are local to each filter, they should be moved to common location with the sitk prefix.
- [SIMPLEITK-432](https://issues.itk.org/jira/browse/SIMPLEITK-432) - upgrade toward ITK 4.5
- [SIMPLEITK-433](https://issues.itk.org/jira/browse/SIMPLEITK-433) - Add Warp ImageFilter
- [SIMPLEITK-434](https://issues.itk.org/jira/browse/SIMPLEITK-434) - Add BinShrink filter
- [SIMPLEITK-436](https://issues.itk.org/jira/browse/SIMPLEITK-436) - Expose the hidden CMake Variable as advanced options.
- [SIMPLEITK-450](https://issues.itk.org/jira/browse/SIMPLEITK-450) - Break compilation of LabelStatisticsImageFilter into 2 file for compilation speed.
- [SIMPLEITK-457](https://issues.itk.org/jira/browse/SIMPLEITK-457) - Add CSharp example and test for GetBuffer methods.
- [SIMPLEITK-467](https://issues.itk.org/jira/browse/SIMPLEITK-467) - Update super ITK build version towards 4.5.1.
- [SIMPLEITK-472](https://issues.itk.org/jira/browse/SIMPLEITK-472) - make using 64 integers default for windows 64
- [SIMPLEITK-473](https://issues.itk.org/jira/browse/SIMPLEITK-473) - Turn on R by default if detected.
- [SIMPLEITK-491](https://issues.itk.org/jira/browse/SIMPLEITK-491) - Move WRAPITK option to advanced.
- [SIMPLEITK-494](https://issues.itk.org/jira/browse/SIMPLEITK-494) - Reduce time taken for lengthy tests.
- [SIMPLEITK-501](https://issues.itk.org/jira/browse/SIMPLEITK-501) - An optional stripping of symbols needs to be done on OSX for the distributed libraries. This reduces the size of the libraries by ~100 Megabytes.

New Feature
- [SIMPLEITK-372](https://issues.itk.org/jira/browse/SIMPLEITK-372) - When testing is disabled Python eggs are not created by the "dist" target.
- [SIMPLEITK-410](https://issues.itk.org/jira/browse/SIMPLEITK-410) - Add BUILD_EXAMPLES option to SimpleITK actual build.
- [SIMPLEITK-422](https://issues.itk.org/jira/browse/SIMPLEITK-422) - Add missing connectivity to threshold connected image filter
- [SIMPLEITK-423](https://issues.itk.org/jira/browse/SIMPLEITK-423) - adding missing resulting measurements to confidence connected filter.
- [SIMPLEITK-435](https://issues.itk.org/jira/browse/SIMPLEITK-435) - Add basic access to Image's Meta Data Dictionary
- [SIMPLEITK-440](https://issues.itk.org/jira/browse/SIMPLEITK-440) - Add option to dim_vec to set as a scalar for all components.
- [SIMPLEITK-441](https://issues.itk.org/jira/browse/SIMPLEITK-441) - Create Prototype for progress reporting and call backs from filters.
- [SIMPLEITK-443](https://issues.itk.org/jira/browse/SIMPLEITK-443) - add DiscreteGaussianDerivative Filter
- [SIMPLEITK-444](https://issues.itk.org/jira/browse/SIMPLEITK-444) - Add additional procedure which take dim_vec as scalars if first parameter.
- [SIMPLEITK-447](https://issues.itk.org/jira/browse/SIMPLEITK-447) - Refactor ImageFilter to include ProcessObject base class
- [SIMPLEITK-449](https://issues.itk.org/jira/browse/SIMPLEITK-449) - There are some basic missing matrix based transforms that are missing such as Euler and Versor transforms.
- [SIMPLEITK-454](https://issues.itk.org/jira/browse/SIMPLEITK-454) - Add call-back events and progress reporting form ITK process objects.
- [SIMPLEITK-456](https://issues.itk.org/jira/browse/SIMPLEITK-456) - Add support to transform continuous index to physical point.
- [SIMPLEITK-462](https://issues.itk.org/jira/browse/SIMPLEITK-462) - Add SWIG Delegate Support for Command Class
- [SIMPLEITK-463](https://issues.itk.org/jira/browse/SIMPLEITK-463) - Add direct lambda support to ProcessObject::AddCommand in Python
- [SIMPLEITK-468](https://issues.itk.org/jira/browse/SIMPLEITK-468) - Add output operator support for KernelEnums
- [SIMPLEITK-469](https://issues.itk.org/jira/browse/SIMPLEITK-469) - Add output operator to PixelIDTypeEnum
- [SIMPLEITK-493](https://issues.itk.org/jira/browse/SIMPLEITK-493) - Add script to upload data to midas.
- [SIMPLEITK-505](https://issues.itk.org/jira/browse/SIMPLEITK-505) - Add threshold value as measurement to auto thresholding filters.
- [SIMPLEITK-506](https://issues.itk.org/jira/browse/SIMPLEITK-506) - Add support for generating python wheel to enable pip to download binaries.

Task
- [SIMPLEITK-437](https://issues.itk.org/jira/browse/SIMPLEITK-437) - Add more Filters.
- [ SIMPLEITK-452](https://issues.itk.org/jira/browse/SIMPLEITK-452) - Add const correctness to Get member functions.
- [SIMPLEITK-455](https://issues.itk.org/jira/browse/SIMPLEITK-455) - Update to SWIG version 2.0.11
- [SIMPLEITK-466](https://issues.itk.org/jira/browse/SIMPLEITK-466) - Add Doxygen page describing commands, and events in process objects.
- [SIMPLEITK-479](https://issues.itk.org/jira/browse/SIMPLEITK-479) - Remove SWIG patch step and just patch the downloaded source
- [SIMPLEITK-481](https://issues.itk.org/jira/browse/SIMPLEITK-481) - Update the Wrapping.dox Doxygen page
- [SIMPLEITK-485](https://issues.itk.org/jira/browse/SIMPLEITK-485) - Update to SWIG 2.0.12
- [SIMPLEITK-486](https://issues.itk.org/jira/browse/SIMPLEITK-486) - Update the JSON doxygen from the ITK XML.
- [SIMPLEITK-487](https://issues.itk.org/jira/browse/SIMPLEITK-487) - Update the SWIG docs files from the update SimpleITK JSON.
- [SIMPLEITK-488](https://issues.itk.org/jira/browse/SIMPLEITK-488) - Update the Filter Coverage
- [SIMPLEITK-492](https://issues.itk.org/jira/browse/SIMPLEITK-492) - Reduce warnings on the dashboard.
- [SIMPLEITK-502](https://issues.itk.org/jira/browse/SIMPLEITK-502) - Create Visual guide for using SimpleITK with CSharp on Windows.
- [SIMPLEITK-504](https://issues.itk.org/jira/browse/SIMPLEITK-504) - Add the SimpleITK Notebook page on progress reporting to the master.

Bug
- [SIMPLEITK-419](https://issues.itk.org/jira/browse/SIMPLEITK-419) - Fix numpy conversion warning on windows.
- [SIMPLEITK-420](https://issues.itk.org/jira/browse/SIMPLEITK-420) - Fix numpy conversion warning on windows.
- [SIMPLEITK-421](https://issues.itk.org/jira/browse/SIMPLEITK-421) - Documentation for Statistics image filter bounding box needs to be corrected.
- [SIMPLEITK-424](https://issues.itk.org/jira/browse/SIMPLEITK-424) - Unable to convert 4GB+ numpy array to sitkImage