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1.4.1a1

What's Changed
* Add options to set background color when exporting video by scott-yj-yang in https://github.com/talmolab/sleap/pull/1328
* Increase range on batch size by roomrys in https://github.com/talmolab/sleap/pull/1513
* Set default callable for `match_lists_function` by roomrys in https://github.com/talmolab/sleap/pull/1520
* Allow passing in `Labels` to `app.main` by roomrys in https://github.com/talmolab/sleap/pull/1524
* Replace (broken) `--unrag` with `--ragged` by roomrys in https://github.com/talmolab/sleap/pull/1539
* Add function to create app by roomrys in https://github.com/talmolab/sleap/pull/1546
* Refactor `AddInstance` command by roomrys in https://github.com/talmolab/sleap/pull/1561
* Import DLC with uniquebodyparts, add Tracks by getzze in https://github.com/talmolab/sleap/pull/1562
* Make the hdf5 videos store as int8 format by lambdaloop in https://github.com/talmolab/sleap/pull/1559
* Scale new instances to new frame size by ssrinath22 in https://github.com/talmolab/sleap/pull/1568
* Fix package export by talmo in https://github.com/talmolab/sleap/pull/1619
* Add resize/scroll to training GUI by KevinZ0217 in https://github.com/talmolab/sleap/pull/1565
* support loading slp files with non-compound types and str in metadata by lambdaloop in https://github.com/talmolab/sleap/pull/1566
* change inference pipeline option to tracking-only by shrivaths16 in https://github.com/talmolab/sleap/pull/1666
* Add ABL:AOC 2023 Workshop link by roomrys in https://github.com/talmolab/sleap/pull/1673
* Graceful failing with seeking errors by talmo in https://github.com/talmolab/sleap/pull/1712
* Fix IndexError for hdf5 file import for single instance analysis files by shrivaths16 in https://github.com/talmolab/sleap/pull/1695
* Replace imgaug with albumentations by talmo in https://github.com/talmolab/sleap/pull/1623
* Fix out of bounds albumentations issues and update dependencies by eberrigan in https://github.com/talmolab/sleap/pull/1724
* Update to new TensorFlow conda package by eberrigan in https://github.com/talmolab/sleap/pull/1726
* Fix CI on macosx-arm64 by talmo in https://github.com/talmolab/sleap/pull/1734
* Add option to export to CSV via sleap-convert and API by eberrigan in https://github.com/talmolab/sleap/pull/1730
* Only propagate Transpose Tracks when propagate is checked by vaibhavtrip29 in https://github.com/talmolab/sleap/pull/1748
* View Hyperparameter nonetype fix by shrivaths16 in https://github.com/talmolab/sleap/pull/1766
* Adding ragged metadata to `info.json` by shrivaths16 in https://github.com/talmolab/sleap/pull/1765
* Add batch size to GUI for inference by shrivaths16 in https://github.com/talmolab/sleap/pull/1771
* Fix conda builds by eberrigan in https://github.com/talmolab/sleap/pull/1776
* Upgrade build actions for release by eberrigan in https://github.com/talmolab/sleap/pull/1779
* Add ZMQ support via GUI and CLI by shrivaths16 in https://github.com/talmolab/sleap/pull/1780
* Change menu name to match deleting predictions beyond max instance by shrivaths16 in https://github.com/talmolab/sleap/pull/1790
* Fix website build and remove build cache across workflows by eberrigan in https://github.com/talmolab/sleap/pull/1786
* Bump to 1.4.1a1 by eberrigan in https://github.com/talmolab/sleap/pull/1791

New Contributors
* scott-yj-yang made their first contribution in https://github.com/talmolab/sleap/pull/1328
* lambdaloop made their first contribution in https://github.com/talmolab/sleap/pull/1559
* ssrinath22 made their first contribution in https://github.com/talmolab/sleap/pull/1568

**Full Changelog**: https://github.com/talmolab/sleap/compare/v1.3.3...v1.4.1a1

1.4.1a0

What's Changed
* Add options to set background color when exporting video by scott-yj-yang in https://github.com/talmolab/sleap/pull/1328
* Increase range on batch size by roomrys in https://github.com/talmolab/sleap/pull/1513
* Set default callable for `match_lists_function` by roomrys in https://github.com/talmolab/sleap/pull/1520
* Allow passing in `Labels` to `app.main` by roomrys in https://github.com/talmolab/sleap/pull/1524
* Replace (broken) `--unrag` with `--ragged` by roomrys in https://github.com/talmolab/sleap/pull/1539
* Add function to create app by roomrys in https://github.com/talmolab/sleap/pull/1546
* Refactor `AddInstance` command by roomrys in https://github.com/talmolab/sleap/pull/1561
* Import DLC with uniquebodyparts, add Tracks by getzze in https://github.com/talmolab/sleap/pull/1562
* Make the hdf5 videos store as int8 format by lambdaloop in https://github.com/talmolab/sleap/pull/1559
* Scale new instances to new frame size by ssrinath22 in https://github.com/talmolab/sleap/pull/1568
* Fix package export by talmo in https://github.com/talmolab/sleap/pull/1619
* Add resize/scroll to training GUI by KevinZ0217 in https://github.com/talmolab/sleap/pull/1565
* support loading slp files with non-compound types and str in metadata by lambdaloop in https://github.com/talmolab/sleap/pull/1566
* change inference pipeline option to tracking-only by shrivaths16 in https://github.com/talmolab/sleap/pull/1666
* Add ABL:AOC 2023 Workshop link by roomrys in https://github.com/talmolab/sleap/pull/1673
* Graceful failing with seeking errors by talmo in https://github.com/talmolab/sleap/pull/1712
* Fix IndexError for hdf5 file import for single instance analysis files by shrivaths16 in https://github.com/talmolab/sleap/pull/1695
* Replace imgaug with albumentations by talmo in https://github.com/talmolab/sleap/pull/1623
* Fix out of bounds albumentations issues and update dependencies by eberrigan in https://github.com/talmolab/sleap/pull/1724
* Update to new TensorFlow conda package by eberrigan in https://github.com/talmolab/sleap/pull/1726
* Fix CI on macosx-arm64 by talmo in https://github.com/talmolab/sleap/pull/1734
* Add option to export to CSV via sleap-convert and API by eberrigan in https://github.com/talmolab/sleap/pull/1730
* Only propagate Transpose Tracks when propagate is checked by vaibhavtrip29 in https://github.com/talmolab/sleap/pull/1748
* View Hyperparameter nonetype fix by shrivaths16 in https://github.com/talmolab/sleap/pull/1766
* Adding ragged metadata to `info.json` by shrivaths16 in https://github.com/talmolab/sleap/pull/1765
* Add batch size to GUI for inference by shrivaths16 in https://github.com/talmolab/sleap/pull/1771
* Fix conda builds by eberrigan in https://github.com/talmolab/sleap/pull/1776
* Upgrade build actions for release by eberrigan in https://github.com/talmolab/sleap/pull/1779

New Contributors
* scott-yj-yang made their first contribution in https://github.com/talmolab/sleap/pull/1328
* lambdaloop made their first contribution in https://github.com/talmolab/sleap/pull/1559
* ssrinath22 made their first contribution in https://github.com/talmolab/sleap/pull/1568

**Full Changelog**: https://github.com/talmolab/sleap/compare/v1.3.3...v1.4.1a0

1.4.0a0

What's Changed
* Add options to set background color when exporting video by scott-yj-yang in https://github.com/talmolab/sleap/pull/1328
* Increase range on batch size by roomrys in https://github.com/talmolab/sleap/pull/1513
* Set default callable for `match_lists_function` by roomrys in https://github.com/talmolab/sleap/pull/1520
* Allow passing in `Labels` to `app.main` by roomrys in https://github.com/talmolab/sleap/pull/1524
* Replace (broken) `--unrag` with `--ragged` by roomrys in https://github.com/talmolab/sleap/pull/1539
* Add function to create app by roomrys in https://github.com/talmolab/sleap/pull/1546
* Refactor `AddInstance` command by roomrys in https://github.com/talmolab/sleap/pull/1561
* Import DLC with uniquebodyparts, add Tracks by getzze in https://github.com/talmolab/sleap/pull/1562
* Make the hdf5 videos store as int8 format by lambdaloop in https://github.com/talmolab/sleap/pull/1559
* Scale new instances to new frame size by ssrinath22 in https://github.com/talmolab/sleap/pull/1568
* Fix package export by talmo in https://github.com/talmolab/sleap/pull/1619
* Add resize/scroll to training GUI by KevinZ0217 in https://github.com/talmolab/sleap/pull/1565
* support loading slp files with non-compound types and str in metadata by lambdaloop in https://github.com/talmolab/sleap/pull/1566
* change inference pipeline option to tracking-only by shrivaths16 in https://github.com/talmolab/sleap/pull/1666
* Add ABL:AOC 2023 Workshop link by roomrys in https://github.com/talmolab/sleap/pull/1673
* Graceful failing with seeking errors by talmo in https://github.com/talmolab/sleap/pull/1712
* Fix IndexError for hdf5 file import for single instance analysis files by shrivaths16 in https://github.com/talmolab/sleap/pull/1695
* Replace imgaug with albumentations by talmo in https://github.com/talmolab/sleap/pull/1623
* Fix out of bounds albumentations issues and update dependencies by eberrigan in https://github.com/talmolab/sleap/pull/1724
* Update to new TensorFlow conda package by eberrigan in https://github.com/talmolab/sleap/pull/1726
* Fix CI on macosx-arm64 by talmo in https://github.com/talmolab/sleap/pull/1734
* Add option to export to CSV via sleap-convert and API by eberrigan in https://github.com/talmolab/sleap/pull/1730
* Only propagate Transpose Tracks when propagate is checked by vaibhavtrip29 in https://github.com/talmolab/sleap/pull/1748
* View Hyperparameter nonetype fix by shrivaths16 in https://github.com/talmolab/sleap/pull/1766
* Adding ragged metadata to `info.json` by shrivaths16 in https://github.com/talmolab/sleap/pull/1765
* Add batch size to GUI for inference by shrivaths16 in https://github.com/talmolab/sleap/pull/1771
* Fix conda builds by eberrigan in https://github.com/talmolab/sleap/pull/1776

New Contributors
* scott-yj-yang made their first contribution in https://github.com/talmolab/sleap/pull/1328
* lambdaloop made their first contribution in https://github.com/talmolab/sleap/pull/1559
* ssrinath22 made their first contribution in https://github.com/talmolab/sleap/pull/1568

**Full Changelog**: https://github.com/talmolab/sleap/compare/v1.3.3...v1.4.0a0

1.3.3

This is a brown-bag release following insufficient restrictions on allowable `tensorflow` versions for the "pypi" extra `sleap[pypi]` in 1.3.2. While the conda packages for 1.3.2 were not affected (since `tensorflow` is pulled in from anaconda), the PyPI only package installed via `pip install sleap[pypi]` had conflicts between the version of `tensorflow` and the version of `keras`. See [1.3.0](https://github.com/talmolab/sleap/releases/tag/v1.3.0), [1.3.1](https://github.com/talmolab/sleap/releases/tag/v1.3.1), and [1.3.2](https://github.com/talmolab/sleap/releases/tag/v1.3.2) for previous notable changes.

From 1.3.2+, to install SLEAP through pip use `pip install sleap[pypi]` to ensure all dependencies are gathered.

As a reminder:

> The 1.3.1 dependency update requires [Mamba](https://mamba.readthedocs.io/en/latest/index.html) for faster dependency resolution. If you already have anaconda installed, then you _can_ set the solver to libmamba in the base environment:
>
>conda update -n base conda
>conda install -n base conda-libmamba-solver
>conda config --set solver libmamba
>
>Any subsequent `mamba` commands in the docs will need to be replaced with `conda` if you choose to use your existing Anaconda installation.
>
>Otherwise, follow the [recommended installation instruction for Mamba](https://mamba.readthedocs.io/en/latest/installation.html).

Quick install
**`mamba` (Windows/Linux/GPU)**:

mamba create -y -n sleap -c conda-forge -c nvidia -c sleap -c anaconda sleap=1.3.3


**`mamba` (Mac)**:

mamba create -y -n sleap -c conda-forge -c anaconda -c sleap sleap=1.3.3


**`pip` (any OS except Apple Silicon)**:

pip install sleap[pypi]==1.3.3


Full Changelog

Fixes
* Do not try to remove item if already deleted by roomrys in https://github.com/talmolab/sleap/pull/1498
* Set `LD_LIBRARY_PATH` on mamba activate by roomrys in https://github.com/talmolab/sleap/pull/1496
* Reset `LD_LIBRARY_PATH` on deactivate by roomrys in 1502

Dependencies
* Add version restirctions to tendorflow for pypi by roomrys in 1485
* Remove `imageio` pin by roomrys in 1501

**Full Changelog**: https://github.com/talmolab/sleap/compare/v1.3.2...v1.3.3

1.3.2

From 1.3.2+, to install SLEAP through PyPI use `pip install sleap[pypi]` to ensure all dependencies are gathered.

As a reminder:

> The 1.3.1 dependency update requires [Mamba](https://mamba.readthedocs.io/en/latest/index.html) for faster dependency resolution. If you already have anaconda installed, then you _can_ set the solver to libmamba in the base environment:
>
>conda update -n base conda
>conda install -n base conda-libmamba-solver
>conda config --set solver libmamba
>
>Any subsequent `mamba` commands in the docs will need to be replaced with `conda` if you choose to use your existing Anaconda installation.
>
>Otherwise, follow the [recommended installation instruction for Mamba](https://mamba.readthedocs.io/en/latest/installation.html).

Quick install
**`mamba` (Windows/Linux/GPU)**:

mamba create -y -n sleap -c conda-forge -c nvidia -c sleap -c anaconda sleap=1.3.2


**`mamba` (Mac)**:

mamba create -y -n sleap -c conda-forge -c anaconda -c sleap sleap=1.3.2


**`pip` (any OS except Apple Silicon)**:

pip install sleap[pypi]==1.3.2


Highlights
* Limit max tracks via track-local queues by shrivaths16 and talmo in https://github.com/talmolab/sleap/pull/1447
* Add option to remove videos in batch by gitttt-1234 in https://github.com/talmolab/sleap/pull/1382 and https://github.com/talmolab/sleap/pull/1406
* Add shortcut to export analysis for current video by KevinZ0217 in https://github.com/talmolab/sleap/pull/1414 and https://github.com/talmolab/sleap/pull/1444
* Add video path and frame indices to metrics by roomrys in https://github.com/talmolab/sleap/pull/1396
* Add a button for copying model config to clipboard by KevinZ0217 in https://github.com/talmolab/sleap/pull/1433
* Add Option to Export CSV by gitttt-1234 in https://github.com/talmolab/sleap/pull/1438

Full Changelog

Enhancements
* Add option to remove videos in batch by gitttt-1234 in https://github.com/talmolab/sleap/pull/1382 and https://github.com/talmolab/sleap/pull/1406
* Add `Track` when add `Instance` by roomrys in https://github.com/talmolab/sleap/pull/1408
* Add `Video` to cache when adding `Track` by roomrys in https://github.com/talmolab/sleap/pull/1407
* Add shortcut to export analysis for current video by KevinZ0217 in https://github.com/talmolab/sleap/pull/1414 and https://github.com/talmolab/sleap/pull/1444
* Add video path and frame indices to metrics by roomrys in https://github.com/talmolab/sleap/pull/1396
* Improve error message for detecting video backend by roomrys in https://github.com/talmolab/sleap/pull/1441
* Add a button for copying model config to clipboard by KevinZ0217 in https://github.com/talmolab/sleap/pull/1433
* Add Option to Export CSV by gitttt-1234 in https://github.com/talmolab/sleap/pull/1438
* Limit max tracks via track-local queues by shrivaths16 and talmo in https://github.com/talmolab/sleap/pull/1447

Fixes
* Minor fix in computation of OKS by shrivaths16 in https://github.com/talmolab/sleap/pull/1383 and https://github.com/talmolab/sleap/pull/1399
* Fix `Filedialog` to work across (mac)OS by roomrys in https://github.com/talmolab/sleap/pull/1393
* Fix panning bounding box by gitttt-1234 in https://github.com/talmolab/sleap/pull/1398
* Fix skeleton templates by roomrys in https://github.com/talmolab/sleap/pull/1404
* Fix labels export for json by roomrys in https://github.com/talmolab/sleap/pull/1410
* Correct GUI state emulation by roomrys in https://github.com/talmolab/sleap/pull/1422
* Update status message on status bar by shrivaths16 in https://github.com/talmolab/sleap/pull/1411
* Fix error thrown when last video is deleted by shrivaths16 in https://github.com/talmolab/sleap/pull/1421
* Add model folder to the unzip path by roomrys in https://github.com/talmolab/sleap/pull/1445
* Fix drag and drop by talmo in https://github.com/talmolab/sleap/pull/1449

Dependencies
* Pin micromamba version by roomrys in https://github.com/talmolab/sleap/pull/1376
* Add pip extras by roomrys in https://github.com/talmolab/sleap/pull/1481

New Contributors
* shrivaths16 made their first contribution in https://github.com/talmolab/sleap/pull/1383
* gitttt-1234 made their first contribution in https://github.com/talmolab/sleap/pull/1382
* KevinZ0217 made their first contribution in https://github.com/talmolab/sleap/pull/1414

**Full Changelog**: https://github.com/talmolab/sleap/compare/v1.3.1...v1.3.2

1.3.1

Highlights
* Update environment creation by roomrys in 1366
* Add `--max_instances` to `sleap-track` and GUI by roomrys in https://github.com/talmolab/sleap/pull/1305
* Increase GUI crop size range from 512 to 832 by roomrys in https://github.com/talmolab/sleap/pull/1295
* Allow returning PAF graph during low level inference by calebweinreb in https://github.com/talmolab/sleap/pull/1329
* Fix GUI resume training by roomrys in https://github.com/talmolab/sleap/pull/1314
* Fixes GPU memory polling using environment variable filtering by ericleonardis in https://github.com/talmolab/sleap/pull/1272

Full Changelog

Enhancements
* Centralize video extensions by talmo in https://github.com/talmolab/sleap/pull/1244
* Organize docks by roomrys in https://github.com/talmolab/sleap/pull/1265
* Increase GUI crop size range from 512 to 832 by roomrys in https://github.com/talmolab/sleap/pull/1295
* Add `--max_instances` to `sleap-track` and GUI by roomrys in https://github.com/talmolab/sleap/pull/1305
* Allow returning PAF graph during low level inference by calebweinreb in https://github.com/talmolab/sleap/pull/1329

Fixes
* Disable data caching by default for SingleImageVideos by talmo in https://github.com/talmolab/sleap/pull/1243
* Fix single frame GUI increment by roomrys in https://github.com/talmolab/sleap/pull/1254
* Fix conversion to numpy array when last frame(s) do not have labels by talmo in https://github.com/talmolab/sleap/pull/1307
* Ensure frames to predict list is unique by roomrys in https://github.com/talmolab/sleap/pull/1293
* Fix GUI resume training by roomrys in https://github.com/talmolab/sleap/pull/1314
* Do not choose `top_k` instances if `max_instances` < num centroids by roomrys in https://github.com/talmolab/sleap/pull/1313
* Remove `--labels` and redundant `data_path` by roomrys in https://github.com/talmolab/sleap/pull/1326
* Create copy of config info to modify (gui) by roomrys in https://github.com/talmolab/sleap/pull/1325
* Fixes GPU memory polling using environment variable filtering by ericleonardis in https://github.com/talmolab/sleap/pull/1272
* Set `split_by_inds`, `test_labels`, and `validation_labels` to default (GUI) by roomrys in https://github.com/talmolab/sleap/pull/1331
* Fix (remove) `SingleImageVideo` caching by roomrys in https://github.com/talmolab/sleap/pull/1330

Dependencies
* Update environment creation by roomrys in 1366

New Contributors
* ericleonardis made their first contribution in https://github.com/talmolab/sleap/pull/1272
* calebweinreb made their first contribution in https://github.com/talmolab/sleap/pull/1329

**Full Changelog**: https://github.com/talmolab/sleap/compare/v1.3.0...v1.3.1

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