* improved vcf to fasta sites method * renamed to snpgenie * use genbank as annotation file * added proximity filter * GUI works for any ref genome * text bam alignment viewer * add folders in gui * clean up files option * fastq quality report
0.1.0
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* first version * CLI workflow works for general microbial genomes * GUI works for mbovis so far * functions working so far: trimming, alignment, variant calling, snp matrix, tree building