Sof-utils

Added

- `sof-convert-labels` tool to convert proximal femur detection labels from label-studio json format to a short csv format.
- Options for `sof-export-images` tool to split images into left and right half.
- Option for `sof-export-images` to only export selected visits.
- Option for `sof-export-images` to include or exclude SOF IDs listed in files.
- Options to group the exported images (`--num-groups`, `--max-group-size` and `--randomized-groups`).
- Option `--zip` for `sof-export-images` to write expoted image directly to (a) zip archive(s).

Removed

- Deprecated and dysfunctional `--jpeg` option for the `sof-export-images` tool

Added

- Image export tool

Added

- Tool to export the images from the SOF_hip dataset to PNG or JPG files.
- Function to extract ID and visit from a filename

Added

- Package version can be now accessed at runtime using `sof_utils.__version__`
- CLI script now have an option to show the version `-V`
- Function to load pixel data from DICOM files.

Released on December 7, 2020

Fixed

- `sof-dicom-corrupted` does not show percentage or ETA when run with `-p`

Released on December 7, 2020

Added

- `sof-dicom-corrupted` command line tool to find corrupted DICOM files

Changed

- The progressbar of the CLI tools now shows an ETA and a percentage