Spatialdata

Added

-

Changed

- Lowered RMSE-threshold for plot-based tests from 45 to 15 (344)
- When subsetting to `groups`, `NA` isn't automatically added to legend (344)
- When rendering a single image channel, a colorbar is now shown (346)
- Removed `percentiles_for_norm` parameter (346)
- Changed `norm` to no longer accept bools, only `mpl.colors.Normalise` or `None` (346)

Fixed

- Filtering with `groups` now preserves original cmap (344)
- Non-selected `groups` are now not shown in `na_color` (344)
- Several issues associated with `norm` and `colorbar` (346)

Fixed

- Incompatibility issues due to newest release of `multiscale-spatial-image` 760

Major

- Enable vectorization of `bounding_box_query` for all `SpatialData` elements. 699

Minor

- Added `shortest_path` parameter to `get_transformation_between_coordinate_systems` 714
- Added `get_pyramid_levels()` utils API 719
- Improved ergonomics of `concatenate()` when element names are non-unique 720
- Improved performance of writing images with multiscales 577

Minor

- Added `clip: bool = False` parameter to `polygon_query()` 670
- Add `sort` parameter to `PointsModel.parse()` 672

Fixed

- Fix interpolation artifact multiscale computation for labels 697

Major

- New disk format for shapes using `GeoParquet` (the change is backward compatible) 542

Minor

- Add `return_background` as argument to `get_centroids` and `get_element_instances` 621
- Ability to save data using older disk formats 542

Fixed

- Circles validation now checks for inf or nan radii 653
- Bug with table name in torch dataset 654 LLehner

Minor

- Relaxing `spatial-image` package requirement 616