Spectrum-io

Changes

🐛 Bug Fixes

* Fix/sage mod masses (114) picciama

:package: Dependencies

* [DEPENDABOT]: Bump codecov/codecov-action from 3.1.1 to 4.4.1 (113) dependabot
* [DEPENDABOT]: Bump lxml from 4.9.4 to 5.2.2 (108) dependabot
* [DEPENDABOT]: Bump peaceiris/actions-gh-pages from 3 to 4 (101) dependabot
* [DEPENDABOT]: Bump release-drafter/release-drafter from 5 to 6 (102) dependabot
* [DEPENDABOT]: Bump pytest from 8.1.2 to 8.2.1 (111) dependabot
* [DEPENDABOT]: Bump coverage from 7.5.0 to 7.5.2 (112) dependabot

Changes

🚀 Features

* Feature/dlib support (99) picciama
* Feature/xl search engine (91) mostafakalhor

🐛 Bug Fixes

* Fix/sage read tmt and decoys (98) picciama
* alphatims RT in minutes instead of seconds (90) arne-vdb

:package: Dependencies

* [DEPENDABOT]: Bump actions/checkout from 2 to 4 (94) dependabot
* [DEPENDABOT]: Bump pypa/gh-action-pypi-publish from 1.6.4 to 1.8.14 (92) dependabot
* [DEPENDABOT]: Bump actions/cache from 3.2.4 to 4.0.2 (93) dependabot

Changes

🚀 Features

* Added functions to read the timsTOF raw .d folder. (76) adamscharlotte

Changes

* Chore/writer optimization (83) picciama

🐛 Bug Fixes
* fixed reading instrumentConfiguration when converting Raw to mzML using MSConvert

🚀 Features

* Feature/generic model support (80) picciama

🚀 Features

* Feature/sage (77) karimwh
* Feature/msfragger mods tmt (78) picciama

🐛 Bug Fixes

* fixed instrumentConfigurationRef missing (75) picciama