Stickydesign

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* Update versions to support Numpy 2.
* Numerous linting and typing fixes.

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* Update stickydesign-accel rust dependencies, pyo3 organization.

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* Deprecated the old C extension. This greatly simplifies the build system, but for now, disables EnergeticsBasicOld.
* Moved to a setup.cfg and pyproject.toml build system with setuptools.
* Created a new package, stickydesign-accel, that contains Rust extensions to accelerate the newer EnergeticsBasic. When installed, this gives a significant (around 20x, I think) speedup.

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* Python and numpy updates.

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* Minor fixes and updates.

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Major changes:

* Added stickydesign2 (used internally by alhambra)