Stranger

Off by one error on PathogenticMin output. All affected have at least been cautioned pre_mutation with proper size.
Added script to check HGNCId-symbol correspondence against genenames.org.
Added script to compare two variant_catalogs and warn on disagreeing field items.
Sync min/max between hg19, hg38 for ATN1, DMPK, FMR1 and TBP.Update BEAN1 documentation reference.
Update PABPN1 source tag.
Update GLS and RFC1 hg19 coordinates (zero based off by one).
Update NIPA1 locus definition updating hg19 to the current ExHu one.
Update ARX and SOX3 0-based off by one. Usually unproblematic, but gives ugly gap on REViewer alignments.
Update HTT PathogenicMin and NormalMax so already reduced penetrance are pathogenic - and mark intermediate pre_mutation.
Update pathologic region annotation on (mostly hg38 liftOver) loci affecting alternate region naming for ATXN7, ATXN8OS, FXN, HTT, CNBP, NOP56.
Update DAB1 repeat unit (revcomp) and off by one coordinates.

Update rank score model.

Add a family_id option and print to RankScore elements.

Updated hg38/grch38 variant catalog.

Add InheritanceMode, DisplayRU, Source and SweGen keys to variant catalog and annotate them out.
Update variant catalog to match ExHu v4.
Update variant catalog to tentatively include GeneReviews entries.

Add a simple rank score.
Template adding references to variant_catalog.