Suite2p

BinaryFile replaces BinaryRWfile as a class and has a method for writing tiffs (ie, for cropping and generating new tifs after loading in a dataset). PyNwb has also been added to the list of dependencies needed for testing.

Fixes the following issues:
- 1007 ModuleNotFoundError with `rastermap.mapping` for GUI
- 943: high pass filter documentation issue
- 944 : File tifs naming issue with leading zeros
- 991: Save_path0 documentation issue

NOTE: right-click + drag now zooms the view; right-click once without dragging for cell flipping (CELL / NOT CELL)

Addresses the following bugs:

- 951: Adds .nd2 input to GUI
- 954: Adds `sparse_detection` mode to GUI
- 953: Fixes dependency issues with latest version of numpy and `np.bool`
- 930 : `bin_frames` has also been patched to accommodate cases in which current batch has fewer frames than `bin_size`.
- 4d9dd2b: Issue with numpy 1.24.4 in which `np.asanyarray` needs explicit input arguments
- 957: Removes scanimage-tiff-reader as a required dependency
- 955: Allows *.mesc files to be loaded with h5 option
- Fixes GUI zooming and panning from recent pyqtgraph update

New additions:

- Changes BinaryFile to use `np.memmap` for file reading/writing (~20% speed up)
- Adds yapf style guide

Fixes several bugs:
- 2channel manual labeling 904
- Multiplane issue with NWB 905
- Saving Ops parameters with GUI 914
- Bad_frames issue with detection 908
- Non-rigid registration 907

Includes:
- nd2 support.

Fixes the following bugs:

- scipy version keepdims issue
- badframes bug
- deprecated parameter pages removed from imread
- blocks registration issue when `ops[nonrigid]` set to false.

suite2p can now handle numpy inputs to the main processing steps of the software! check out this [notebook](https://github.com/MouseLand/suite2p/blob/main/jupyter/run_suite2p_colab_2021.ipynb) (thanks chriski777!) with the exposed functions for registration, cell detection and ROI extraction.