Changelog: - change default value for maximum distance in partitioning from 10kb to 1kb - fix coordinates of BNDs (from 0-based to 1-based) - fix sorting of VCF records - add verbose mode which prints ignored partitions to log
Changelog: - add genotyping of translocation breakpoints (BNDs) - bugfixes
0.1.1
Changelog: - improve breakend detection - add FORMAT:CN tag for tandem duplications - add two new command-line options to output duplications as INS records in VCF - bugfixes