Taxtastic

Latest version: v0.11.0

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0.11.0

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* Updated NCBI taxdmp.zip download protocol from ftp to https [GH-156]
* New subcommand `taxit named` that filters unclassified, unnamed taxonomy ids
* Subcommand update_taxids can now process a tab delimited headerless file
* Subcommand taxtable has option to continue if unknown taxids
* Added Dockerfile support for execution on cirro.app
* Updated taxonomy ranks to replace superkingdom with domain [GH-171]

0.10.1

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* Fixed broken GH-Pages build

0.10.0

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* drop support for Python versions before 3.8
* works with sqlalchemy 2+, drop support for sqlalchemy 1.x series
* drop indexes and constraints before creating Postgresql database
* restructure Dockerfile, uses python:3.11-slim-bullseye base image
* simplify setup.py and remove deprecated features
* major speed improvements to subcommand namelookup
* added support text file support for update_taxids

0.9.4

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* general improvements and updates to Github Actions Workflows

0.9.3

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* migrated docker/* into Dockerfile and GH Actions automatic container build (.github/workflows/docker-publish.yml)

0.9.2

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* Support for parsing RAxML-ng v1.0.2 log file [GH-132]
* Support for RAxML-ng/epa-ng .bestModel using taxit create

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