Thunderboltz

Fix

* fix: use c++ rng instead of c built-in ([`668ee6f`](https://github.com/lanl/ThunderBoltz/commit/668ee6f452a2885e7a523d1524e64347ffa1974b))

* fix: Nmin criteria is now taken as max

Instead of using N_A N_B product criteria to determine NP,
it will only do so if more particles are required compared to the NP
set by the user. ([`8056016`](https://github.com/lanl/ThunderBoltz/commit/8056016ee868cdbfaa38c4fe094e0d7e6530f13f))

Chore

* chore: forward difference takes default parameter ([`564cd2b`](https://github.com/lanl/ThunderBoltz/commit/564cd2b28ae8b5eeed0fc16133de9793d09d3a74))

Documentation

* docs: remove reference to linear model

From old curve fit code (didn&39;t work because of small time step
values). ([`2420449`](https://github.com/lanl/ThunderBoltz/commit/242044990634961f150c5cc84a66cd4458d50e61))

Feature

* feat: Add user defined timeseries plotting. ([`862ec81`](https://github.com/lanl/ThunderBoltz/commit/862ec81e8c94b767225a83427c8fc0c15c3016c3))

* feat: added plot_tree ([`bd9534d`](https://github.com/lanl/ThunderBoltz/commit/bd9534d239752b23523c773f8b136c1c12e33ab2))

Test

* test: update test for fits -> fit rename ([`7bc391c`](https://github.com/lanl/ThunderBoltz/commit/7bc391c9c08382a2f2c41bf1669f1697093ba2cb))

Documentation

* docs: update readme + spelling ([`656eeb4`](https://github.com/lanl/ThunderBoltz/commit/656eeb464e75ba81df805974fff91be152a3a8a0))

* docs: spelling ([`94fbb13`](https://github.com/lanl/ThunderBoltz/commit/94fbb130037977ad4d917406ecf042b8294205ed))

* docs: update onsager analytic rate expression ([`4fa850f`](https://github.com/lanl/ThunderBoltz/commit/4fa850f8b3c2b1d69847ff428cb7f7c1ef24c07f))

* docs: add diffusion documentation ([`9ff3b33`](https://github.com/lanl/ThunderBoltz/commit/9ff3b33fcb2626215ac7adde483671e61fd5e4d4))

Feature

* feat: allow cross section plotter to accept labels ([`1e48e80`](https://github.com/lanl/ThunderBoltz/commit/1e48e803d64146d14c2f4af96130f3ae5eb71f6e))

* feat: add optional fit for all time derivatives ([`644afc2`](https://github.com/lanl/ThunderBoltz/commit/644afc2a5ba63016266be280ddf6fca950fd8d59))

* feat: add Reid ramp setup through python API ([`76b4714`](https://github.com/lanl/ThunderBoltz/commit/76b4714c786fb63c74c9fc83bf730feb1bc2a07b))

* feat: add diffusion correlation calcs to c++ src ([`0049912`](https://github.com/lanl/ThunderBoltz/commit/00499122be5e670f0fdc8184ee007acaac1070ef))

Fix

* fix: Remove SST experiments from transport figure ([`a7573b6`](https://github.com/lanl/ThunderBoltz/commit/a7573b641df08c86dc4a8e2c7db56bd7ae3043c0))

* fix: fillna preventing ionization calculation ([`4e968ff`](https://github.com/lanl/ThunderBoltz/commit/4e968ff4de0f3031070126bd09bf89f206d01dd9))

* fix: change onsager cross sections and fig ([`924fce9`](https://github.com/lanl/ThunderBoltz/commit/924fce92bb1bc4e6b6ec33598d644f3ac0241832))

* fix: change CR default to 0 (match w/ cpp default) ([`efec58f`](https://github.com/lanl/ThunderBoltz/commit/efec58f5777f042da1fa019607901e1c9106f92a))

Test

* test: add ExB direction check ([`be8843e`](https://github.com/lanl/ThunderBoltz/commit/be8843ed3121e1b928769c2b146b5866176a4d04))

Documentation

* docs: add open option for doc build file ([`5b35206`](https://github.com/lanl/ThunderBoltz/commit/5b3520626740bd47c55f1f3e4caf8552e6e720c9))

* docs: add more references to cumulative counts ([`a7df529`](https://github.com/lanl/ThunderBoltz/commit/a7df529b87f899d339f3739439c7aa2b0a7584a1))

Feature

* feat: add method get_counts() and docs ([`a23f110`](https://github.com/lanl/ThunderBoltz/commit/a23f11022d3e230deaf1f6db0e845561ed6e2a58))

Documentation

* docs: add figures to quick start guide ([`e9a8cdc`](https://github.com/lanl/ThunderBoltz/commit/e9a8cdcf7a27342dcbc5ac36eb99e7980391e888))

* docs: fix readme rst in md, add doc badge ([`1aded9b`](https://github.com/lanl/ThunderBoltz/commit/1aded9b12395915f45b98a9dbd3c1a510b92f36f))

* docs: update docs with new repo location

Also, add status badges to readme. ([`89f76c2`](https://github.com/lanl/ThunderBoltz/commit/89f76c20a9c79281ab7647ef39ad6b35444c5464))

* docs: update html short index with pip inst. ([`290decd`](https://github.com/lanl/ThunderBoltz/commit/290decd0ac0d9b6b020362ce5c851925a4b1c85e))

* docs: update html index with pip install ([`72b1faa`](https://github.com/lanl/ThunderBoltz/commit/72b1faa13acf636390bb06a1f2480777232396a4))

Fix

* fix: add save option to rate figure ([`273cee4`](https://github.com/lanl/ThunderBoltz/commit/273cee48821c71ada0bdc22d2e925095be21819c))

Build

* build: fix typo in pyproject toml config

cc ([`901d626`](https://github.com/lanl/ThunderBoltz/commit/901d6263e87a92cf089bdc989ae8a73fa0cc6e83))

* build: debug release with verbose ([`f1a857f`](https://github.com/lanl/ThunderBoltz/commit/f1a857f79b25faa9188cc428bbcc4ffc1369d33d))

* build: adjust python scipy requirements ([`61aba35`](https://github.com/lanl/ThunderBoltz/commit/61aba35248296f0ea9fdc85f81011ba707b2eb0c))

* build: use compatible python version in RTD build ([`4e1df9e`](https://github.com/lanl/ThunderBoltz/commit/4e1df9ef507e2c0594c1db3fea5c14ea8242ffd2))

* build: remove release spec from sphinx

Add autoapi dir spec. ([`ca4bc1d`](https://github.com/lanl/ThunderBoltz/commit/ca4bc1d177e87463fcec373b348eeac9f9e276c8))

* build: require thunderbolz in rtd reqs ([`fea855a`](https://github.com/lanl/ThunderBoltz/commit/fea855a39962db92e6fdb3a1c1de685882fcaf8b))

Documentation

* docs: format readme ([`7d6b6b6`](https://github.com/lanl/ThunderBoltz/commit/7d6b6b6ad4d22b1b6dbdd7e823ebd3a5c75c3670))

* docs: require napoleon build vsn ([`3a0f20f`](https://github.com/lanl/ThunderBoltz/commit/3a0f20f94f44f03568d9330e8803d46d016b7f65))

* docs: require specific doc build vsn in rtd req ([`5d4f953`](https://github.com/lanl/ThunderBoltz/commit/5d4f953363d49d6f258d7cb92d8626b112279fd8))

* docs: correct cpp source file loc in readme ([`409ae0a`](https://github.com/lanl/ThunderBoltz/commit/409ae0a47b9de83c6d2566f128b8223782d90cea))

Fix

* fix: Update readme with pip install option ([`9fd94bc`](https://github.com/lanl/ThunderBoltz/commit/9fd94bc16e5d824ee0ecb34bb3cd0d68983ba701))