Timeseriesflattener

Latest version: v2.2.6

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0.7.0

Feature
* Full run ([`142212f`](https://github.com/Aarhus-Psychiatry-Research/timeseriesflattener/commit/142212fc63a59662048b6569dc874def92dfe62f))
* Rename aggregation registry keys to their previous one ([`3fd3f35`](https://github.com/Aarhus-Psychiatry-Research/timeseriesflattener/commit/3fd3f3566a8a9312ef9a8326a700b162ed9815c3))
* Reimplement ([`c99585f`](https://github.com/Aarhus-Psychiatry-Research/timeseriesflattener/commit/c99585fdf9f9f407a69e0ead05f935d34ed86a63))
* Use lru cache decorator for values_df loading ([`4006818`](https://github.com/Aarhus-Psychiatry-Research/timeseriesflattener/commit/40068187da20854fcca980872bc42b8a3a096cc9))
* Add support for loader kwargs ([`127f821`](https://github.com/Aarhus-Psychiatry-Research/timeseriesflattener/commit/127f8215c35b792390595b890210baa0e8cf3591))
* Move values_df resolution to anyspec object ([`714e83f`](https://github.com/Aarhus-Psychiatry-Research/timeseriesflattener/commit/714e83fd3722b298cdd256b06915659ca7a34259))
* Make date of birth output prefix a param ([`0ed1198`](https://github.com/Aarhus-Psychiatry-Research/timeseriesflattener/commit/0ed11982ba1b239e5650d23dbfab707100e38137))
* Ensure that dfs are sorted and of same length before concat ([`84a4d65`](https://github.com/Aarhus-Psychiatry-Research/timeseriesflattener/commit/84a4d65b731a6822d0a8f6313d01b7de9c574afe))
* Use pandas with set_index for concat ([`b93290a`](https://github.com/Aarhus-Psychiatry-Research/timeseriesflattener/commit/b93290ae733857855abe8197291dd047cf6c6fa8))
* Use pandas with set_index for concat ([`995da41`](https://github.com/Aarhus-Psychiatry-Research/timeseriesflattener/commit/995da419baef8fdb1f205610d63805c152156474))
* Speed up dask join by using index ([`3402281`](https://github.com/Aarhus-Psychiatry-Research/timeseriesflattener/commit/34022814b6e9c93a715a2d6343f7c038feb6a932))
* Require feature name for all features, ensures proper specification ([`6af454a`](https://github.com/Aarhus-Psychiatry-Research/timeseriesflattener/commit/6af454a325bdb07a37c435246b0ead4d4dad971b))
* First stab at adapting generate_main ([`7243130`](https://github.com/Aarhus-Psychiatry-Research/timeseriesflattener/commit/724313073d5eb225b3eddba597064f35053b0bd4))
* Add exclusion timestamp ([`b02de1a`](https://github.com/Aarhus-Psychiatry-Research/timeseriesflattener/commit/b02de1a92f12545bc1ac0ea40f98468f21185259))
* Improve dd.concat ([`429da34`](https://github.com/Aarhus-Psychiatry-Research/timeseriesflattener/commit/429da346b0de1e07809176a1d2d34962c7e9770a))
* Handle strs for generate_feature_spec ([`7d54488`](https://github.com/Aarhus-Psychiatry-Research/timeseriesflattener/commit/7d5448853ba3bdd0b13071afbb2c738d741337d3))
* Convert to dd before concat ([`06101d8`](https://github.com/Aarhus-Psychiatry-Research/timeseriesflattener/commit/06101d86561af56eebaea2090baaf27aa3747b71))
* Add n hba1c ([`3780d84`](https://github.com/Aarhus-Psychiatry-Research/timeseriesflattener/commit/3780d841699d2a6b9077ca4fa3117d69f32bb123))
* Add n hba1c ([`614245e`](https://github.com/Aarhus-Psychiatry-Research/timeseriesflattener/commit/614245ead3fcc5b554a26ba515ff689d2627429b))

Fix
* Coerce by default ([`60adb99`](https://github.com/Aarhus-Psychiatry-Research/timeseriesflattener/commit/60adb999c83b6d93d97f1c6537f20c012721561e))
* Output_col_name_override applied at loading, not flattening ([`95a96ce`](https://github.com/Aarhus-Psychiatry-Research/timeseriesflattener/commit/95a96ce64a186c01f4e4e09d8787a97e42388df8))
* Typo ([`01240ed`](https://github.com/Aarhus-Psychiatry-Research/timeseriesflattener/commit/01240ed7b06843011593bcb3c3c71283918c90b2))
* Incorrect attribute addressing ([`a6e82b5`](https://github.com/Aarhus-Psychiatry-Research/timeseriesflattener/commit/a6e82b59ca353413066346e089f1557dc831d145))
* Correctly resolve values_df ([`def67cd`](https://github.com/Aarhus-Psychiatry-Research/timeseriesflattener/commit/def67cd954440df76f1570acf7e48f68ae636d6c))
* MinGroupSpec should take a sequence of name to permute over ([`f0c8140`](https://github.com/Aarhus-Psychiatry-Research/timeseriesflattener/commit/f0c814017b6f355d5916ba15fe26d9f3350a3a7b))
* Typo ([`61c7241`](https://github.com/Aarhus-Psychiatry-Research/timeseriesflattener/commit/61c7241d11f7bff3bad11e98cfea38600e239167))
* Remove aggregation_fn_name ([`617d386`](https://github.com/Aarhus-Psychiatry-Research/timeseriesflattener/commit/617d386095139bc3445a5f4d14ffebce1e5ffa24))
* Old concat resulted in wrong ordering of rrows. ([`3759f71`](https://github.com/Aarhus-Psychiatry-Research/timeseriesflattener/commit/3759f719070175c8be4184a0bdc5fc07db2c492c))
* Set hba1c as eval ([`89fe6d2`](https://github.com/Aarhus-Psychiatry-Research/timeseriesflattener/commit/89fe6d209b93d345d9a0d8cd562e90ec395dfa8d))
* Typos ([`6eac440`](https://github.com/Aarhus-Psychiatry-Research/timeseriesflattener/commit/6eac4408d8f0a58bb4cc66ac948bae5519a2c8cd))
* Correct col name inference for static predictors ([`dfe5dc7`](https://github.com/Aarhus-Psychiatry-Research/timeseriesflattener/commit/dfe5dc72d5d22332ce3d496fb1d3bcca3c9328c7))
* Misc. fixes ([`45f8348`](https://github.com/Aarhus-Psychiatry-Research/timeseriesflattener/commit/45f83488bef809ae059825caea9bf6937a5264d9))
* Generate the correct amount of combinations when creating specs ([`c472b3c`](https://github.com/Aarhus-Psychiatry-Research/timeseriesflattener/commit/c472b3c69e0dfc64b433546e538298ddd2d44a5f))
* Typo resulted in cache breaking ([`fdd47d7`](https://github.com/Aarhus-Psychiatry-Research/timeseriesflattener/commit/fdd47d705f166fcc3dc54612dc0387761d0489a9))
* Correct col naming ([`bc74ae3`](https://github.com/Aarhus-Psychiatry-Research/timeseriesflattener/commit/bc74ae3089a7bbfc99ee31d82902e1c98e30f18e))
* Do not infer feature name from values_df ([`150569f`](https://github.com/Aarhus-Psychiatry-Research/timeseriesflattener/commit/150569fde483f6c427f1efe5688038340dfceb92))
* Misc. errors found from tests ([`3a1b5db`](https://github.com/Aarhus-Psychiatry-Research/timeseriesflattener/commit/3a1b5db493566592b349d317f7641d7564a662ad))
* Revert falttened dataset to use specs ([`e4fada7`](https://github.com/Aarhus-Psychiatry-Research/timeseriesflattener/commit/e4fada7a9fb98d1ebccd6c41568619aa7e059d79))
* Misc. errors after introducing feature specs ([`0308eca`](https://github.com/Aarhus-Psychiatry-Research/timeseriesflattener/commit/0308ecae8032ff309725b0917fd3901fadf102f9))
* Correctly merge dataframes ([`a907885`](https://github.com/Aarhus-Psychiatry-Research/timeseriesflattener/commit/a907885f592ba345cdf68ce5299699aacdc97b49))
* Cache error because of loss off UUID ([`89d7f6f`](https://github.com/Aarhus-Psychiatry-Research/timeseriesflattener/commit/89d7f6f0ce557c7c3126116864ba75d0ddb0037e))
* New bugs in aggregation ([`5714a39`](https://github.com/Aarhus-Psychiatry-Research/timeseriesflattener/commit/5714a39c9e84081f6429dd0b8119873a9610e804))
* Rename outcomespec appropriately ([`41fa220`](https://github.com/Aarhus-Psychiatry-Research/timeseriesflattener/commit/41fa22069453ac6df7dae824d49944775cf12ecc))
* Lookbehind_days must be iterable ([`cc879e9`](https://github.com/Aarhus-Psychiatry-Research/timeseriesflattener/commit/cc879e9d6b0f806a2a604ff71cb3febbd625c2aa))

Documentation
* Document feature spec objects ([`c7f1074`](https://github.com/Aarhus-Psychiatry-Research/timeseriesflattener/commit/c7f10749d49b14a4614436097de2478f3e7fc879))
* Typo ([`6bc7140`](https://github.com/Aarhus-Psychiatry-Research/timeseriesflattener/commit/6bc71405a318de4811f259b2823c91f1951ebb95))

Performance
* Move pd->dd into subprocesses ([`dc5f38d`](https://github.com/Aarhus-Psychiatry-Research/timeseriesflattener/commit/dc5f38db7d09900955e475d9c87837dab207ba9b))

0.6.3

Fix
* Remove shak_code + operator check ([`f97aee8`](https://github.com/Aarhus-Psychiatry-Research/timeseriesflattener/commit/f97aee8ff932270abed737308591cc87678062a8))

0.6.2

Fix
* Ignore cat_features ([`2052505`](https://github.com/Aarhus-Psychiatry-Research/timeseriesflattener/commit/20525056d6e97aceb277a5e05cde3d8e701650e3))
* Failing test ([`f8190b4`](https://github.com/Aarhus-Psychiatry-Research/timeseriesflattener/commit/f8190b47b020782e1029f875bc3acee5c3abe566))
* Incorrect 'latest' and handling of NaN in cache ([`dc33f7e`](https://github.com/Aarhus-Psychiatry-Research/timeseriesflattener/commit/dc33f7ef68c065814779f44b7dd8e65c46755fea))

0.6.1

Fix
* Check for value column prediction_times_df ([`5356464`](https://github.com/Aarhus-Psychiatry-Research/timeseriesflattener/commit/5356464ee5dbe302cf2bafd3203be88016e6bcaf))
* Change variable name ([`990a848`](https://github.com/Aarhus-Psychiatry-Research/timeseriesflattener/commit/990a848a7d63410d06e491664d549f04a24a4384))
* More flex loaders ([`bcad700`](https://github.com/Aarhus-Psychiatry-Research/timeseriesflattener/commit/bcad70092069cb818a67383bd8a925248edf04cd))

0.6.0

Feature
* Use wandb to monitor script errors ([`67ae9b9`](https://github.com/Aarhus-Psychiatry-Research/timeseriesflattener/commit/67ae9b9ebecef68d4d0ceb74b58dc7bd3f6798b6))

Fix
* Duplicate loading when pre_loading dfs ([`7f864dc`](https://github.com/Aarhus-Psychiatry-Research/timeseriesflattener/commit/7f864dca9315b296e16cc1c9efd84e73627c9e2f))

0.5.2

Fix
* Change_per_day function ([`bf4f18c`](https://github.com/Aarhus-Psychiatry-Research/timeseriesflattener/commit/bf4f18c10c66b8daa660d9ad9bb0dd05361dde75))
* Change_per_day function ([`b11bcaa`](https://github.com/Aarhus-Psychiatry-Research/timeseriesflattener/commit/b11bcaaaac0e8de75e798491b0e4355220029773))

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