Tomotwin-cryoet

What's Changed

* `tomotwim_embed.py` is now 1.6x faster and linearly scales across multiple GPUs by thorstenwagner in https://github.com/MPI-Dortmund/tomotwin-cryoet/pull/40
* Exploiting new the compile option of the latest pytorch 2.1 nightly build.
* Internally DistributedDataParallel is used instead of DataParallel
* Unpin pytorch version by thorstenwagner in https://github.com/MPI-Dortmund/tomotwin-cryoet/pull/46

**Full Changelog**: https://github.com/MPI-Dortmund/tomotwin-cryoet/compare/v0.5.1...v0.6.0.1

What's Changed

TomoTwin
* Add option to specify a mask during embedding by thorstenwagner in https://github.com/MPI-Dortmund/tomotwin-cryoet/pull/27
* Accept key error when evaluation is running and use more flexibel label idenetification by thorstenwagner in https://github.com/MPI-Dortmund/tomotwin-cryoet/pull/32
* Fix bug when extracting label from filename by thorstenwagner in https://github.com/MPI-Dortmund/tomotwin-cryoet/pull/33

Napari tools
* napari-tomotwin has been updated to version 0.2 to add medoid cluster target calculation by thorstenwagner . Learn more at https://github.com/MPI-Dortmund/napari-tomotwin/releases/tag/v0.2.0
* napari-boxmanager has been updated to version 0.4 by thorstenwagner. Learn more at https://github.com/MPI-Dortmund/napari-boxmanager/releases/tag/v0.4.0


Documentation
* Added citation file (citation.cff) to nature methods by thorstenwagner in https://github.com/MPI-Dortmund/tomotwin-cryoet/pull/22
* Added some developer information thorstenwagner in https://github.com/MPI-Dortmund/tomotwin-cryoet/pull/26
* Added documentation for masking by thorstenwagner in https://github.com/MPI-Dortmund/tomotwin-cryoet/pull/28
* Updated changelist for version 0.5 by thorstenwagner in https://github.com/MPI-Dortmund/tomotwin-cryoet/pull/34
* Various updates by GavinR1 and thorstenwagner in https://github.com/MPI-Dortmund/tomotwin-cryoet/pull/23 https://github.com/MPI-Dortmund/tomotwin-cryoet/pull/30 https://github.com/MPI-Dortmund/tomotwin-cryoet/pull/31 https://github.com/MPI-Dortmund/tomotwin-cryoet/pull/29

**Full Changelog**: https://github.com/MPI-Dortmund/tomotwin-cryoet/compare/v0.4.3...v0.5.0

What's Changed
* Add the citation.cff by thorstenwagner in https://github.com/MPI-Dortmund/tomotwin-cryoet/pull/18
* Automatic release by GitHub actions on pypi by thorstenwagner in https://github.com/MPI-Dortmund/tomotwin-cryoet/pull/19
* Updated dependencies and new installation instructions by thorstenwagner in https://github.com/MPI-Dortmund/tomotwin-cryoet/pull/21


**Full Changelog**: https://github.com/MPI-Dortmund/tomotwin-cryoet/compare/v0.4.2.2...v0.4.3

This is the official clustering workflow release :-) We updated the tutorial and added all the necessary tools. Reinstall to get all the necessary tools!

What's Changed
* Make pytest and coverage running by thorstenwagner in https://github.com/MPI-Dortmund/tomotwin-cryoet/pull/8
* Refactor locate and add unit tests by thorstenwagner in https://github.com/MPI-Dortmund/tomotwin-cryoet/pull/9
* Added more unit tests, documentation and did some refactoring by thorstenwagner in https://github.com/MPI-Dortmund/tomotwin-cryoet/pull/10
* Clustering workflow release by thorstenwagner in https://github.com/MPI-Dortmund/tomotwin-cryoet/pull/11
* add changes for 0.4.0 by thorstenwagner in https://github.com/MPI-Dortmund/tomotwin-cryoet/pull/12
* update installation instructions by thorstenwagner in https://github.com/MPI-Dortmund/tomotwin-cryoet/pull/13


**Full Changelog**: https://github.com/MPI-Dortmund/tomotwin-cryoet/compare/v0.3.0...v0.4.2

**Full Changelog**: https://github.com/MPI-Dortmund/tomotwin-cryoet/compare/v0.2.2...v0.3.0

**Full Changelog**: https://github.com/MPI-Dortmund/tomotwin-cryoet/compare/v0.2.1.6...v0.2.2