Trailblazer

Refactor set analysis status (274)

Added

- Tests

Changed

- Refactor set analysis status and migrate to CRUD

Remove empty fixture call (277)

Changed

- Remove empty fixture call

Remove test fixture prefix and name decorator (275)


Changed

- Remove test fixture prefix and name decorator

Add config model (272) (major)


Added

- ANALYSIS_HOST to dockerfile to enable setting it at runtime
- Add and use Pydantic Config model for CLI input
- Tests

Changed

- Use `trailblazer_db` instead of ´trailblazer` in click.context
- Remove `database` from click.context as it was not used
- Remove `database` CLI option
- Refactor `database` in config to `database_url`
- Require config option on CLI
- Use ANALYSIS_HOST when using SSH

Refactor cancel slurm job (273)

Changed

- Refactor and migrate`cancel_slurm_job` to SLURM API
- Removed `cancel_slurm_job` from Mockstore

Refactor mark analyses deleted (269)

Added

- Tests
- Added `get_analyses_for_case` function

Changed

- Refactored and migrated `mark_analyses_deleted` into CRUD modules.
- Refactored `case_name` to `case_id`