Transcriptic

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Added
~~~~~
- New `-e/--exclude` and `-i/--include` flags to `exec`. It filters out the autoprotocol
instructions in the backend.

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Fixed
~~~~~

- Adapt the backend url resolution with the new configuration of the frontend client.

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Added
~~~~~
- A new `-tc-suggestion/--time-constraints-are-suggestion` flag to `exec`.
- A new `--no-redirect` flag to `exec`. It allows the endpoint of the scle test
workcell instance to be used, instead of the client dashboard.

Fixed
~~~~~

- The workcell id in `exec` was forced to be `wcN`. There is now no restrictions.

Updated
~~~~~~~

- Added support for sessions and absolute time constraint in `exec` CLI command.
Added "--sessionId", "--schedule-at", and "--schedule-delay" flags.
- The api url expected by the `exec` method has been changed to be the url of
the new dashboard (unless `--no-redirect` is used). It has the shape:
`base_url/facility/workcell`. It does not require `http` to be added anymore.

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Added
~~~~~
- A new `generated_containers` attribute to the `Instruction` object

----------

Added
~~~~~
- A new `exec` command to send autoprotocol to a test workcell
- isort for automatic import sorting
- Example initial tests for `commands` file using `responses` pattern, starting with
`submit` and `projects`.
- Deprecation warning for existing `-i` option for `projects` command.
- Binder build cache step
- All API requests will now pass the organization context as a request header

Fixed
~~~~~

- Issue with CodeCov for GitHub action CI
- `-i` option for `projects` command did not output anything to console when called from
cli.
- Pinned numpy to <=1.19.5 due to an incompatibility issue with numpy 1.20.0 on python 3.7

Updated
~~~~~~~

- Added new option "--names" to `projects` CLI command. This is meant as a better
named and more intuitive replacement for the existing `-i` option.
- Returned more explicit error statuses for `projects` and `submit` commands.
- Remove notebooks directory as we break it out into a `separate repository <https://github.com/open-strateos/txpy_jupyter_notebooks>`_
- Plumbed test posargs through to allow local execution of specific test files.
- Autoprotocol dependency to >=7.6.1,<8 for `Instruction` `informatics` attribute

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Added
~~~~~

- example notebook for Analysis package exploration
- sample Absorbance and Kinetics datasets
- `transcriptic.sampledata` module for enabling mocked Jupyter object exploration without establishing an explicit connection
- example notebook for Jupyter object exploration
- Downloads badge to keep track of usage

Updated
~~~~~~~

- Migrated from travis to github actions as a CI backend
- Remove unused `scipy` dependency
- Break out Jupyter objects into individual files. This affects direct imports from
`transcriptic.jupyter.objects`