* Update numpy to v2 and python>=3.9 (34)
* Update README to clarify that 0 intensities are considered missing values (31)
* More descriptive IndexError when PEPs (or q-values?) cannot be calculated from score distribution (29)
* Better error message for same run name in different conditions (30)
* Fix percolator parser to support filename column
* Fix system tests to allow tolerance of 0.1% for floating point numbers