Tweetynet

Added
- Add ability to use model with post-processing transform, by adding
`post_tfm` parameter to `TweetyNetModel.from_config` method.
This makes `tweetynet` work with `vak` version 0.8.0.
[219](https://github.com/yardencsGitHub/tweetynet/pull/219).
Fixes [218](https://github.com/yardencsGitHub/tweetynet/issues/218).

Changed
- change minimum required Python to 3.8,
to adhere to [NEP-29](https://numpy.org/neps/nep-0029-deprecation_policy.html), in
[216](https://github.com/yardencsGitHub/tweetynet/pull/216).
Fixes [214](https://github.com/yardencsGitHub/tweetynet/issues/214).
- raise lower bound on `vak` to 0.6.0,
to work with new `vak` version that removes `logger` parameter
from `vak.Engine.model.from_config`.
[216](https://github.com/yardencsGitHub/tweetynet/pull/216).
Fixes [215](https://github.com/yardencsGitHub/tweetynet/issues/214).

Removed
- remove `logger` argument from `TweetyNetModel.from_config`,
to work with new `vak` version that removes `logger` parameter
from `vak.Engine.model.from_config`.
[216](https://github.com/yardencsGitHub/tweetynet/pull/216).
Fixes [215](https://github.com/yardencsGitHub/tweetynet/issues/214).

Changed
- update READMEs with link to eLife article
[195](https://github.com/yardencsGitHub/tweetynet/pull/195)

Removed
- remove notebooks in `doc/notebooks` to avoid giving people
the impression that is how they should work with the code
[195](https://github.com/yardencsGitHub/tweetynet/pull/195)

Added
- add code related to eLife article.
See [revisions project](https://github.com/yardencsGitHub/tweetynet/projects/1) for details.

Changed
- make many code changes related to eLife article.
See [revisions project](https://github.com/yardencsGitHub/tweetynet/projects/1) for details.
- refactor project so code for article is separate from `tweetynet` code
[188](https://github.com/yardencsGitHub/tweetynet/pull/188)
Fixes [187](https://github.com/yardencsGitHub/tweetynet/issues/187).
- raise minimum required versions of `vak` and `pytorch`
[9708e2b](https://github.com/yardencsGitHub/tweetynet/commit/9708e2bab2b3ddb175c893396a40670a5da82b23).

[0.6.0](https://github.com/yardencsGitHub/tweetynet/releases/tag/0.6.0) -- 2021-04-04
Added
- add hyperparameters for RNN component of `TweetyNet` architecture
to its `__init__` function, including size of hidden state
[73](https://github.com/yardencsGitHub/tweetynet/pull/73).
Fixes [70](https://github.com/yardencsGitHub/tweetynet/issues/70).

Changed
- rewrite README.md
[56](https://github.com/yardencsGitHub/tweetynet/pull/56)
- rename `yarden2annot` parameter `annot_file` to `annot_path`
to work with `crowsetta` version 3.0.0

Fixed
- fix script for running `eval` on `BFSongRepo` models
[49](https://github.com/yardencsGitHub/tweetynet/pull/49)
- fix bug in BFRepository-results/all-birds.ipynb -- wrong variable name

Changed
- specify minimum required version of `vak` as 0.3.1