Uta-tools

- Fix bugs in mane transcript

- Fixes position bug when using get_mane_transcript on genomic coordinate

- Update tests for new MANE version
- Fix some residue / inter-residue bugs

- MANE Transcript data returns inter-residue coordinates
- Add flake8-quotes, flake8-annotations, import-order
- Move over remaining methods from variation-normalizer
- chromosome <-> accessions, get transcripts given a genomic position + accession, get mane transcript data from a list of transcripts
- get_tx_exon_aln_v returns a List

* Refactor SeqRepoAcess class
* Provide specific, informative feedback upon failure in SeqRepoAccess

- Fix bug when creating connection args to local db
- Fix MANE Transcript position bug by adding strand logic