Vafator

Latest version: v2.2.0

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1.3.1

Changes

* Fix a conflict of arguments in CLI

1.3.0

Changes

* Update vafator2decifer script with filter of samples by purity (+ some other things)

1.2.6

Bugfix

* vafator2decifer.py script was introducing a float instead of an integer in the read depth columns which was confusing decifer

1.2.5

Bugfix

- DP and AF values in indels were wrong as only reads with the indel was counted in DP

1.2.4

Changes

* Maximum coverage when going through a pileup is not capped to 8000 anymore (this is pysam's default)
* Several refactors with the aim of improving performance although this did not happen...
* Added support for python 3.10 + upgraded several dependencies

1.1.5

Fixes

* Update Nextflow workflow to use latest vafator version v.1.1.4

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