Vembrane

Changes

- Update numpy version (to address dependabot warning) tedil (107). This requires `python >= 3.8`.
- Also update versions of other dependencies.

Chores

- update github actions to automatically consider all current python versions starting from 3.8 for testing

Changes

- Add `without_na`, `replace_na` and common functions from python's `statistics` module tedil (104)
- Enable `--overwrite-number` option for table subcommand as well tedil (106)

Changes

- In vep's "EXON" annotation field, range/totals like `4-6/27` are allowed, where we previously always assumed number/totals like `4/27` only. With this change, both range/total and number/total format are treated as range/total, and the field names on the type are now `range` and `total` , changed from `number` and `total`, possibly breaking existing filter/table expressions (e.g. `5 in ANN["EXON"].range and ANN["EXON"].total == 27`). dlaehnemann (103)

Changes

- Add more annotation types dlaehnemann (102)

Changes

Features

- Annotate christopher-schroeder (98)

Bug Fixes

- Fix subsequent ALT accesses yielding list not str mbargull (101)
- fix and test table args handling dlaehnemann (95)

Maintenance

- Fix tests to check all expected entries/headers mbargull (100)

Changes

- Add `__len__` to InfoTuple tedil (94)

Bug Fixes

- A flag should be a single boolean value, not a tuple with 1 entry tedil (96)