Virtool-workflow

[6.0.0-alpha.4](https://github.com/virtool/virtool-workflow/compare/6.0.0-alpha.3...6.0.0-alpha.4) (2023-12-14)


Features

* add `reference` to `new_index` ([db0086c](https://github.com/virtool/virtool-workflow/commit/db0086c6a3685bfcbaaf337d2874e2031b60938a))

[6.0.0-alpha.3](https://github.com/virtool/virtool-workflow/compare/6.0.0-alpha.2...6.0.0-alpha.3) (2023-12-14)


Bug Fixes

* report the last step in the status reports when a job completes ([6fa5fc4](https://github.com/virtool/virtool-workflow/commit/6fa5fc4401ae9d9a5bcf42b77c0928a380e9fbe3))

[6.0.0-alpha.2](https://github.com/virtool/virtool-workflow/compare/6.0.0-alpha.1...6.0.0-alpha.2) (2023-12-14)


Bug Fixes

* support unpaired reads in `fastqc` and add testing ([c7565f6](https://github.com/virtool/virtool-workflow/commit/c7565f60c85fc63fa508aa8b75cb51f2b0d7d89c))

[6.0.0-alpha.1](https://github.com/virtool/virtool-workflow/compare/5.5.0-alpha.3...6.0.0-alpha.1) (2023-12-14)

[5.5.0-alpha.3](https://github.com/virtool/virtool-workflow/compare/5.5.0-alpha.2...5.5.0-alpha.3) (2023-12-13)


Bug Fixes

* restore missing built-in fixtures ([2d43338](https://github.com/virtool/virtool-workflow/commit/2d43338c0f9bf5bd42ab8a48afaa6e436999e27e))

[5.5.0-alpha.2](https://github.com/virtool/virtool-workflow/compare/5.5.0-alpha.1...5.5.0-alpha.2) (2023-12-13)


Bug Fixes

* resolve circular import error ([149d9f4](https://github.com/virtool/virtool-workflow/commit/149d9f40e183a95958b06ccabe6c680b30d01d10))