Viziphant

New functionality and features
---------------------------------------------
- Added new functionality to visualize complex sets of (spike) patterns as hypergraphs (75)

Bug fixes
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- Resolved a bug in the `plot_ue` function that addressed issues with joining axes in the plot (72)

Miscellaneous
---------------------
- Updated the copyright statement to reflect the latest changes (68)
- Enhance security of actions (69)
- Install mirror to gitlab (67)
- In Readthedocs, deprecated the configuration key `build.image` in favor of `build.os` (71)

Selected dependency changes
--------------------------------------------
bokeh>=3.0.0
holoviews>=1.16.0
networkx>=3.0.0

Documentation
-----------------------
* Fixed math display for equations in docs by using mathjax as renderer 59
* Remove title "Viziphant" from navigation bar 60
* Fix documentation, remove version cap on sphinxcontrib-bibtex, add new citation style 57
* Fix navigation bar not showing up in documentation 64

New functionality and features
---------------------------------------------
* Add parameter to exclude labels from plotting in add_event function. 50
* Add limit check to add_event function to prevent labels outside bounds of figure. 49
* GPFA function plot_dimensions_vs_time passing neo.Events to the plotting function to make it more robust and flexible 52

Bug fixes
-------------
* Fix bug in add_events where only the last event was plotted. 53
* Fix bug with newer versions of matplotlib by replacing gca() with add_subplot(). 56

Miscellaneous
---------------------
* CI: update GitHub actions commands, remove deprecated commands 58
* Add first unit test for ASSET plot_synchronous_events 63

Selected dependency changes
--------------------------------------------
* Update python version, drop support for python 3.6 and 3.7 51 62
* Update to quantities >0.14.0 61

Documentation
-------------
* Documentation revised in style, logo was added

New functionality and features
------------------------------
* New `patterns` module to display spike patterns by elephant modules, such as SPADE or CAD (https://github.com/INM-6/viziphant/pull/35)
* New function to display the spike contrast measure (https://github.com/INM-6/viziphant/pull/34)
* Added function to display rate trajectories plotted by the GPFA module (https://github.com/INM-6/viziphant/pull/37)

Bug fixes
---------
* Bug fixes for the ISI and Unitary Event plots (https://github.com/INM-6/viziphant/pull/31) and (https://github.com/INM-6/viziphant/pull/32).

Miscellaneous
-------------
* Continuous Integration (CI) was moved to github actions (https://github.com/INM-6/viziphant/pull/41)

Selected dependency changes
---------------------------
* `elephant>=0.9.0`

New functionality
----------------------

* Spike train statistics:
- plot_isi_histogram
- plot_time_histogram
- plot_instantaneous_rates_colormesh
* Spike train correlation:
- plot_corrcoef
- plot_cross_correlation_histogram
* add_event function
* SPADE:
- plot_patterns_statistics
- plot_patterns
* GPFA:
- plot_dimensions_vs_time
- plot_trajectories
- plot_transform_matrix
- plot_cumulative_shared_covariance