Vsi2tif

What's Changed
* Updated README with citation section and zenodo badge by andreped in https://github.com/andreped/vsi2tif/pull/33
* Change default JPEG compression quality from 85 to 87 by andreped in https://github.com/andreped/vsi2tif/pull/34
* Added default value to argument description in CLI; improved documentation by andreped in https://github.com/andreped/vsi2tif/pull/35


**Full Changelog**: https://github.com/andreped/vsi2tif/compare/v0.1.4...v0.1.5

What's Changed
* Added integration test workflow by andreped in https://github.com/andreped/vsi2tif/pull/31


**Full Changelog**: https://github.com/andreped/vsi2tif/compare/v0.1.3...v0.1.4

What's Changed
* Run build-test CI on all PRs by andreped in https://github.com/andreped/vsi2tif/pull/27
* Handling spaces in filenames by dbouget in https://github.com/andreped/vsi2tif/pull/26
* Dynamic plane export by dbouget in https://github.com/andreped/vsi2tif/pull/25
* CI run event standardization; typehint fixing; argparse refactoring by andreped in https://github.com/andreped/vsi2tif/pull/29
* Dynamic import handling to allow python debugging by andreped in https://github.com/andreped/vsi2tif/pull/30

New Contributors
* dbouget made their first contribution in https://github.com/andreped/vsi2tif/pull/26

**Full Changelog**: https://github.com/andreped/vsi2tif/compare/v0.1.2...v0.1.3

What's Changed
* Added support for Windows; only installation steps needed updating by andreped in https://github.com/andreped/vsi2tif/pull/21
* Error handling during conversion; fixed env bug to allow vips to be accessible from subprocess by andreped in https://github.com/andreped/vsi2tif/pull/22


**Full Changelog**: https://github.com/andreped/vsi2tif/compare/v0.1.1...v0.1.2

What's Changed
* Added simple Jupyter notebook example for getting started by andreped in https://github.com/andreped/vsi2tif/pull/11
* Fixed URL in README for notebook by andreped in https://github.com/andreped/vsi2tif/pull/12
* Include WSI visualization in notebooka by andreped in https://github.com/andreped/vsi2tif/pull/13
* Ignore overview image in batch mode by andreped in https://github.com/andreped/vsi2tif/pull/14
* Preserve input structure during conversion in batch mode by andreped in https://github.com/andreped/vsi2tif/pull/15
* Bump v0.1.1; support python>=3.6 by andreped in https://github.com/andreped/vsi2tif/pull/16
* Implemented release CI by andreped in https://github.com/andreped/vsi2tif/pull/17


**Full Changelog**: https://github.com/andreped/vsi2tif/compare/v0.1.0...v0.1.1

Summary
First stable release of the **vsi2tif** command line tool for WSI conversion.

The tool allows for seamless conversion of WSis from the Olympus cellSens VSI format to Generic TIFF, which is a format compatible with commonly used packages for WSI processing, such as OpenSlide, FAST, and cuCUM.

What's Changed
* major rework - see mini changelog inside vsi2tif.py by sekro in https://github.com/andreped/vsi2tif/pull/1
* Fixed bug: Error when spaces present in filepath by smistad in https://github.com/andreped/vsi2tif/pull/2
* Quick fix to make compression of final image work by sekro in https://github.com/andreped/vsi2tif/pull/3
* Reimplemented tool into a python CLI by andreped in https://github.com/andreped/vsi2tif/pull/5
* Added single and batch conversion support by andreped in https://github.com/andreped/vsi2tif/pull/6
* Implemented linting shell scripts and CI workflow by andreped in https://github.com/andreped/vsi2tif/pull/7
* Implemented build and test CI for python CLI by andreped in https://github.com/andreped/vsi2tif/pull/8
* Fixed single wsi conversion; updated documentations by andreped in https://github.com/andreped/vsi2tif/pull/9
* Added support to set CLI verbosity by andreped in https://github.com/andreped/vsi2tif/pull/10

New Contributors
* sekro made their first contribution in https://github.com/andreped/vsi2tif/pull/1
* smistad made their first contribution in https://github.com/andreped/vsi2tif/pull/2
* andreped made their first contribution in https://github.com/andreped/vsi2tif/pull/5

**Full Changelog**: https://github.com/andreped/vsi2tif/commits/v0.1.0