Xsamtools

Update README.md (98)
Add options for --force-samples and --print-header (97)
Spelling.
Add curses lib. (95)
Add extra error parsing. (75)
Add decode container header function. (91)
Add int32 decode method. (90)
Add LFT8 decode/encode. (89)
Add decode itf8 array. (83)
Add functions to encode and decode itf8. (82)
Add cram file definition. (81)
Enable CI/CD (85)
Fix linting. (87)
Pin six (84)
Fix mypy. (86)
Switch to warning mixin in test_cram. (80)
Fix linting. (79)
Enable and test cram CLI. (77)
Add crai parsing. (76)
Bump TNU (73)
Add basic cram view with no slicing. (74)
Bump TNU (72)

Pin CLI builder. (71)

Workaround for firecloud installation issue (70)
Improve vcf merge tests (69)
Blob writer uses FIFO base class (68)
Blob reader uses FIFO base class (67)
Split tests into separate files (66)
Reorganize test warning suppression (65)
Introduce FIFO Pipe base class (64)
Perform access checks before opening FIFO pipes (62)
Introduce gs_utils access methods (63)

Fix docker image tagging, rename env var (61)
Update makefile to clean before release (59)
Update docker login script (58)
Attach package version to dockerfile tag (57)
Add script to compute docker image tag (56)
XSAMTOOLS_IMAGE_NAME -> XSAMTOOLS_IMAGE_BASE_NAME (55)
Move docker recipes into common.mk (54)
Remove release undo recipe from Makefile (53)
Use XSAMTOOLS_HOME to verify env has been sourced (52)
Update with samtools docker dep.
Fix makefile variables (50)
Add logging to pipes (49)
Share a process executor among all pipes (48)
Update type hint: use Sequence instead of Iterable (47)
Move access verification to utilities classes (46)
Verify bucket access before pipe subprocesses (45)
Check return codes of subprocesses (44)
Assert bcftools is available in VCF commands (43)
Add convenience methods for access verification (42)
Install samtools binary.
Fix repo home env vars (40)
Improve type hints (39)
Add convenience stubbed object (38)
Readable/writable handles avoiding FIFO deadlock (37)
Correctly shutdown gscio.Reader (36)
Use ProcessPoolExecutor for process concurrency (35)
Use mpu queue for safer reader exit (34)
Enable requester pays for DRS objects (33)
Simplify environment (31)
Bump terra-notebook-utils (32)
Dockerfile installs xsamtools from local repo root (28)

Add drs support (25)