Abagen

=====================

More bug fixes for (identified thanks to richardajdear and Silflame!) as well
as some minor QOL updates for getting sample-level information from workflows.

* [REF] Handle atlases w/decimal vox sizes (197), rmarkello
* [REF] Re-orient img in `leftify_atlas()` (193), rmarkello
* [FIX] Fixes logger error w/reports (192), rmarkello
* [FIX] Error with donor-specific atlases and tolerance=0 (191), rmarkello
* [REF] Fix coordinates of get_samples_in_mask (189), rmarkello

======================

Small bug fix when `probe_selection='average'` and minor QOL update to
`check_atlas()`.

* [ENH] Add geometry/space option to check_atlas (186), rmarkello
* [FIX] Fixes 'average' probe selection bug (185), rmarkello

====================

First minor release! :tada: This update brings some major changes to the
codebase, including a massive internal refactoring to allow handling of surface
parcellations, new methods for interpolating missing data, and more!

**Important**: as this is our first official minor release, note that the
changes in this release are *not backwards compatible* with previous versions.

* [ENH] Adds interareal similarity thresholding (184), rmarkello
* [REF] Allow negative tolerance for surfaces (183), rmarkello
* [REF] Updates reports for `missing` param (182), rmarkello
* [DOC] Updates master refs to main (181), rmarkello
* [ENH] Adds interpolation options for missing data (180), rmarkello
* [REF] Updates mouse data cache location (179), rmarkello
* [FIX] Bugfix for lr_mirror parameter (178), rmarkello
* [ENH] Adds reporting of processing methods (177), rmarkello
* [FIX] Nan hemisphere designation (176), rmarkello
* [FIX] Addresses bug when `tolerance=0` (175), rmarkello
* [TEST] Add py3.8 to azure tests (174), rmarkello
* [REF] Constrains centroid matching by atlas_info (173), rmarkello
* [REF] Updates CLI to match main workflow (172), rmarkello
* [REF] Modifies `lr_mirror` to accept single hemisphere mirroring (171), rmarkello
* [ENH] Add `norm_structures` parameter (170), rmarkello
* [ENH] Adds ability to handle surface parcellations (169), rmarkello
* [TEST] Parametrize `test_resid_dist` (164), 4lovi4

========================

Largely internal codebase changes, but an important bug fix for compatibility
with newer versions of ``pandas``.

Huge thanks to 4lovi4 for all their contributions!

* [FIX] Read_csv error when using pandas >= 1.2.0 (167), rmarkello
* [TEST] Change Azure VM image to fix SSL (165), rmarkello
* Adds Python 3.8 testing support to CircleCI (163), 4lovi4
* issue 73 unquote url (162), 4lovi4
* issue 80 doc string fix (161), 4lovi4
* issue 139 readme fix (160), 4lovi4

========================
Only two changes—but relatively impactful ones—including the addition of a new
workflow-style function (``abagen.get_samples_in_mask()``) to get preprocessed
tissue samples without aggregating in specific brain regions and the ability to
provide parcellations in donor-native space (rather than MNI space).

Documentation has been updated to reflect all new features!

* [ENH] Adds handling for donor-specific atlases (156), rmarkello
* [ENH] Allows users to get microarray samples in mask (155), rmarkello

=======================
Minor bug fixes, including:

* [FIX] Allow None input to CLI norm opts (153), rmarkello
* [MNT] Pin minimum pandas version to 0.25 (151), rmarkello
* [DOC] Adds Fulcher norm ref (149), rmarkello
* [FIX] Always remap annotation dataframe cols (147), rmarkello
* [FIX] Allow 'common' for donor_probes method (146), rmarkello